Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1999g00006 ATGGGAAAGCATTCCCTTATTGATAATATATTTGTCGTGACTATCATTTTGAGACCAGAAACAAATTTGCTTGCATTGATGCCATTATTGAATCAGAACATTTTGCTATCAAGCCATGGGGGTGATGCTGTGCTAAAGATAGCTGATTTTGGTCTCTCAAGAACTATATGCCCGGGCGAGTATGCTGAGACTGTTTGTGGTTCTCCATTATACATGGCTCCAGAAGTTCTTCAGTTTCAGAGATATGATGACAAGGCAGACATGTGGAGTGTTGGGACCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTTATGGTACAAATAATGTTCAGCTGTTGAAAAACATCAGATCCTGTACCTGTCTTCCATTTTCTCCGCTGATTCTTTCGGGATTGGATCCTGACTGTCTTGATATTTGTTCAAGACTACTAAGCTTAAATCCAGGGGAGCGCATATCTTTTGATGAATTTTATTGGCATAGGTTTCTACGAAGAAAGTTGATAGGAACATGA 516 0.3953 MGKHSLIDNIFVVTIILRPETNLLALMPLLNQNILLSSHGGDAVLKIADFGLSRTICPGEYAETVCGSPLYMAPEVLQFQRYDDKADMWSVGTILFELLNGYPPFYGTNNVQLLKNIRSCTCLPFSPLILSGLDPDCLDICSRLLSLNPGERISFDEFYWHRFLRRKLIGT 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1999g00006 171 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 31 165 IPR045269 GO:0004674|GO:0006914
Gabi1999g00006 171 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1999g00006 171 Pfam Protein kinase domain 31 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1999g00006 171 FunFam - 29 170 - -
Gabi1999g00006 171 SUPERFAMILY Protein kinase-like (PK-like) 32 166 IPR011009 -
Gabi1999g00006 171 Gene3D Transferase(Phosphotransferase) domain 1 29 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1999g00006 Gabi-Chr1999 138889 141204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1999g00006 16 165 Calcium Dependent Protein Kinase AT4G04695 36.076 2.78e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Gabi1999g00006 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1999g00006 - - gmx:100787409 288.5