Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1999g00003 ATGCCAGTGAGGCAGATGAAAGAAGGCTCAGAGCAACACCTTGTGATCAAAACCCATTTGCAGAACCCCATGAATCCATCTAAGAAGGTTTCTAGAGCTGTCCAAAATGGCAAAGGTCCACCACTGCCACAAGAACCCCATAACCAAACTTCACCTCAGGCTAGGAACAAAGGAAGAAGAAGGGGTGGAGGAGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGACCTAGTTGCCGACCCTGCACTGTTGTGACAAATACTGCAAATGGGCCTGTTGAAAATGGCAGCATCTCTGGTGACATAGAAATGAGTTATCCTACTTCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGTTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCATTATGATGTCTCTATTACTCCCGAAGTGTCTTCCAAAGCAGTAAATAGGTCCATCATAGCAGAACTTGTGAGACGGTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGGCGCTTCCCTTTTCATGGAGAGAGTTTAAGATTAAGCTTGCAGACGAAGAGGATGGAGTTAATGGCCACAGAAGGGAAAGAGAATACAGAGTGGTGATCAAGTTTGTTGCTCAGGCAAACTTGCACCACTTGGGCCAGTTTCTAGCGGGTAAGCGTGCTGATGCTCCACAGGAGGCACTCCAAATCCTTGACATTGTTCTAAGAGAGTTATCATCTAAGAGGTTTTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATCAGAACACCACAACGGCTCGGAGAGGGATTGGAGTCATGGTGTGGGTTTTACCAGAGCATAAGACCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCTGCATTCATTGAACCTCTTCCAGTAGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGTTGTCAAGGCAATTGTCTGATGCAGATCGCATCAAGATTAAGAAAGCCCTAAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGTAGTGTTAGAAGAAAGTATCGTGTTTCAGGTTTAACTTCTCAACCAACAAGAGAACTAGTGTTTCCCGTTGATGAGAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTAAACATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTGGAGGGGCAACGTTATACAAAGAGGTTGAATGAGAAACAAATTACTGCTCTCCTTAAAGTTACTTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGAGGACCATTCAGCAAAATGCGTATGATCAAGATCCATATGCAAAGGAATTTGGGATTAAAATCAGTGAAAAATTAGCTTCTGTGGAAGCACGAATTCTTCCTGCCCCATGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTGCAAGATAGTGTTGCTCGCACTTTTTGTAACGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTATAATGCCAAACCTGAGCAGGTGGAGAAAGCATTGAAGCATGTTTACCATGTGTCAACGAACAAAACCAAAGGAAAGGAACTGGAGCTTTTGTTAGCAATATTGCCGGACAATAATGGGTCTCTCTATGGGGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTATTTAAGATCACAAAGCAGTACTTGGCTAATGTGTCTCTGAAGATCAATGTCAAGATGGGAGGTAGAAACACTGTTCTTGTTGATGCTGTTAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTGACCCATCCTGAAAATGGAGAAGACTCTAGCCCCTCAATTGCAGCTGTAGTAGCATCACAAGACTGGCCTGAGGTGACAAAATATGCAGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAGGATTTGTACAAAACTTGGCATGACCCTGTTCGTGGCATAGTTAGTGGTGGCATGATCAGAGATTTGTTGGTTTCCTTTAGAAAGGCAACTGGACAGAAGCCACTAAGGATCATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTAGGAAGGCTTGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTCGTACAGAAAAGACATCATACTCGGTTGTTCGCAAACAACCACAGGGACAGGAACAGTACAGATAAAAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATTCAGGGTACAAGTCGTCCAGCTCATTATCATGTTTTATGGGATGAAAACAACTTTACAGCAGATGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCGAGGTGTACACGCTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCTATATGGAACCAGACCTGCAGGAAAATGGCTCAACAGGTGGTGGTAGTGCTGGTCATGGTTCCAAGGCAACACGAGCAGCTGGAGATTGCGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTATTGTTAG 2937 0.427 MPVRQMKEGSEQHLVIKTHLQNPMNPSKKVSRAVQNGKGPPLPQEPHNQTSPQARNKGRRRGGGGRKSDQGDVLMRPSCRPCTVVTNTANGPVENGSISGDIEMSYPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNHYDVSITPEVSSKAVNRSIIAELVRRYKESDLGMRLPAYDGRKSLYTAGALPFSWREFKIKLADEEDGVNGHRREREYRVVIKFVAQANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQQNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGIVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENGSTGGGSAGHGSKATRAAGDCGVKPLPALKENVKRVMFYC 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1999g00003 978 Gene3D - 680 978 IPR036397 GO:0003676
Gabi1999g00003 978 Pfam Argonaute linker 2 domain 463 509 IPR032472 -
Gabi1999g00003 978 Pfam PAZ domain 346 453 IPR003100 GO:0005515
Gabi1999g00003 978 FunFam Protein argonaute-2 316 442 - -
Gabi1999g00003 978 ProSiteProfiles PAZ domain profile. 323 437 IPR003100 GO:0005515
Gabi1999g00003 978 Pfam Piwi domain 612 931 IPR003165 GO:0003676
Gabi1999g00003 978 CDD Piwi_ago-like 481 931 IPR045246 -
Gabi1999g00003 978 FunFam Argonaute 10 501 674 - -
Gabi1999g00003 978 Pfam N-terminal domain of argonaute 127 261 IPR032474 -
Gabi1999g00003 978 Pfam Argonaute linker 1 domain 271 320 IPR014811 -
Gabi1999g00003 978 SUPERFAMILY PAZ domain 317 477 IPR036085 GO:0005515
Gabi1999g00003 978 MobiDBLite consensus disorder prediction 18 77 - -
Gabi1999g00003 978 CDD PAZ_argonaute_like 322 436 - -
Gabi1999g00003 978 Gene3D - 501 674 - -
Gabi1999g00003 978 MobiDBLite consensus disorder prediction 18 32 - -
Gabi1999g00003 978 MobiDBLite consensus disorder prediction 42 56 - -
Gabi1999g00003 978 SMART Piwi_a_2 611 932 IPR003165 GO:0003676
Gabi1999g00003 978 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 107 933 - -
Gabi1999g00003 978 SMART PAZ_2_a_3 327 459 IPR003100 GO:0005515
Gabi1999g00003 978 SUPERFAMILY Ribonuclease H-like 603 933 IPR012337 -
Gabi1999g00003 978 SMART DUF1785_2 270 322 IPR014811 -
Gabi1999g00003 978 FunFam protein argonaute 10-like 680 978 - -
Gabi1999g00003 978 Pfam Mid domain of argonaute 520 597 IPR032473 -
Gabi1999g00003 978 ProSiteProfiles Piwi domain profile. 611 932 IPR003165 GO:0003676
Gabi1999g00003 978 Gene3D paz domain 316 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1999g00003 Gabi-Chr1999 34373 42877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1999g00003 1 978 Eukaryotic Initiation Factors Gene Family AT5G43810 81.645 0.0 1662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1999g00003 K11593 - gmx:100816999 1815.05