Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1999g00002 ATGCCAGTGAGGCAGATGAAAGAAGGCTCAGAGCAACACCTTGTGATCAAAACCCATTTGCAGAACCCCATGAATCCATCTAAGAAGGTTTCTAGAGCTGTCCAAAATGGCAAAGGTCCACCACTGCCACAAGAACCCCATAACCAAACTTCACCTCAGGCTAGGAACAAAGGAAGAAGAAGGGGTGGAGGAGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGACCTAGTTGCCGACCCTGCACTGTTGTGACAAATACTGCAAATGGGCCTGTTGAAAATGGCAGCATCTCTGGTGACATAGAAATGAGTTATCCTACTTCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGTTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCATTATGATGTCTCTATTACTCCCGAAGTGTCTTCCAAAGCAGTAAATAGGTCCATCATAGCAGAACTTGTGAGACGGTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGGCGCTTCCCTTTTCATGGAGAGAGTTTAAGATTAAGCTTGCAGACGAAGAGGATGGAGTTAATGGCCACAGGGAAAGAGAATACAGAGTGGTGATCAAGTTTGTTGCTCAGGCAAACTTGCACCACTTGGGCCAGTTTCTAGCGGGTAAGCGTGCTGATGCTCCACAGGAGGCACTCCAAATCCTTGACATTGTTCTAAGAGAGTTATCATCTAAGAGGTTTTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATCAGAACACCACAACGGCTCGGAGAGGGATTGGAGTCATGGTGTGGGTTTTACCAGAGCATAAGACCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCTGCATTCATTGAACCTCTTCCAGTAGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGTTGTCAAGGCAATTGTCTGATGCAGATCGCATCAAGATTAAGAAAGCCCTAAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGTAGTGTTAGAAGAAAGTATCGTGTTTCAGGTTTAACTTCTCAACCAACAAGAGAACTAGTGTTTCCCGTTGATGAGAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTAAACATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTGGAGGGGCAACGTTATACAAAGAGGTTGAATGAGAAACAAATTACTGCTCTCCTTAAAGTTACTTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGAGGACCATTCAGCAAAATGCGTATGATCAAGATCCATATGCAAAGGAATTTGGGATTAAAATCAGTGAAAAATTAGCTTCTGTGGAAGCACGAATTCTTCCTGCCCCATGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTGCAAGATAGTGTTGCTCGCACTTTTTGTAACGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTATAATGCCAAACCTGAGCAGGTGGAGAAAGCATTGAAGCATGTTTACCATGTGTCAACGAACAAAACCAAAGGAAAGGAACTGGAGCTTTTGTTAGCAATATTGCCGGACAATAATGGGTCTCTCTATGGGGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTATTTAAGATCACAAAGCAGTACTTGGCTAATGTGTCTCTGAAGATCAATGTCAAGATGGGAGGTAGAAACACTGTTCTTGTTGATGCTGTTAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTGACCCATCCTGAAAATGGAGAAGACTCTAGCCCCTCAATTGCAGCTGTAGTAGCATCACAAGACTGGCCTGAGGTGACAAAATATGCAGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAGGATTTGTACAAAACTTGGCATGACCCTGTTCGTGGCATAGTTAGTGGTGGCATGATCAGAGATTTGTTGGTTTCCTTTAGAAAGGCAACTGGACAGAAGCCACTAAGGATCATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTAGGAAGGCTTGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTCGTACAGAAAAGACATCATACTCGGTTGTTCGCAAACAACCACAGGGACAGGAACAGTACAGATAAAAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATTCAGGGTACAAGTCGTCCAGCTCATTATCATGTTTTATGGGATGAAAACAACTTTACAGCAGATGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCGAGGTGTACACGCTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCTATATGGAACCAGACCTGCAGGAAAATGGCTCAACAGGTGGTGGTAGTGCTGGTCATGGTTCCAAGGCAACACGAGCAGCTGGAGATTGCGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTATTGTTAG 2934 0.4271 MPVRQMKEGSEQHLVIKTHLQNPMNPSKKVSRAVQNGKGPPLPQEPHNQTSPQARNKGRRRGGGGRKSDQGDVLMRPSCRPCTVVTNTANGPVENGSISGDIEMSYPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNHYDVSITPEVSSKAVNRSIIAELVRRYKESDLGMRLPAYDGRKSLYTAGALPFSWREFKIKLADEEDGVNGHREREYRVVIKFVAQANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQQNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGIVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENGSTGGGSAGHGSKATRAAGDCGVKPLPALKENVKRVMFYC 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1999g00002 977 Pfam Mid domain of argonaute 519 596 IPR032473 -
Gabi1999g00002 977 Pfam N-terminal domain of argonaute 127 260 IPR032474 -
Gabi1999g00002 977 Gene3D - 500 673 - -
Gabi1999g00002 977 FunFam protein argonaute 10-like 679 977 - -
Gabi1999g00002 977 SUPERFAMILY PAZ domain 316 476 IPR036085 GO:0005515
Gabi1999g00002 977 Pfam Argonaute linker 1 domain 270 319 IPR014811 -
Gabi1999g00002 977 Pfam Piwi domain 611 930 IPR003165 GO:0003676
Gabi1999g00002 977 CDD PAZ_argonaute_like 321 435 - -
Gabi1999g00002 977 Pfam Argonaute linker 2 domain 462 508 IPR032472 -
Gabi1999g00002 977 Gene3D - 679 977 IPR036397 GO:0003676
Gabi1999g00002 977 MobiDBLite consensus disorder prediction 18 77 - -
Gabi1999g00002 977 SUPERFAMILY Ribonuclease H-like 602 932 IPR012337 -
Gabi1999g00002 977 MobiDBLite consensus disorder prediction 18 32 - -
Gabi1999g00002 977 FunFam Protein argonaute-2 315 441 - -
Gabi1999g00002 977 SMART DUF1785_2 269 321 IPR014811 -
Gabi1999g00002 977 MobiDBLite consensus disorder prediction 42 56 - -
Gabi1999g00002 977 SMART Piwi_a_2 610 931 IPR003165 GO:0003676
Gabi1999g00002 977 CDD Piwi_ago-like 480 930 IPR045246 -
Gabi1999g00002 977 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 107 932 - -
Gabi1999g00002 977 ProSiteProfiles Piwi domain profile. 610 931 IPR003165 GO:0003676
Gabi1999g00002 977 ProSiteProfiles PAZ domain profile. 322 436 IPR003100 GO:0005515
Gabi1999g00002 977 SMART PAZ_2_a_3 326 458 IPR003100 GO:0005515
Gabi1999g00002 977 FunFam Argonaute 10 500 673 - -
Gabi1999g00002 977 Pfam PAZ domain 345 452 IPR003100 GO:0005515
Gabi1999g00002 977 Gene3D paz domain 315 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1999g00002 Gabi-Chr1999 34373 42877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1999g00002 1 977 Eukaryotic Initiation Factors Gene Family AT5G43810 81.645 0.0 1657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1999g00002 K11593 - gmx:100816999 1810.04