Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1998g00006 ATGGAAAACCACCAAAACCACGACCCAGACCAAGACCTAGAGAAGCAACGCCAACATCAAACCTGGGGCACGTGGGAGGAGCTCTTGCTCGCGTGCGCCGTCAAACGCCACGGCTTCAAGGACTGGGACACCGTCGCCATGGAGGTCCAGTCCCGCACCACCCGCCCCCACCTCCTCGCCACCGCGCGCCACTGCGAGCAAAAATTTCACGATCTCAGCCGCCGATTTGCAAACGAATGCAACGATGACGTTCCTCTGCCTAAGCAGAACGGCGCCGCCGCCGGCGAAAACTCCGATCACGTCCCCTGGCTCGACGAATTGAAGAAACTCCGCGTCGCGGAGCTCCGGCAGGAGGTCGAACGTCGTGACTTCTCCATTCTTTCGTTGAAGTTAGAAGTAAAGAGGTTAGAGGAGGAGAAGGGGAAAGAGAATGACGGAAATGAAGACGAGAAACCAGATCCGGCGGTTCCCGGCAAGCAGCGGCCAGAAAAGGACAAAATCGGCGGAGAACAAGAAAAGACTGAACCGGCCAATTCCGAACCGGAGATGCGCCGGCTCGATGAGAGCACCACTAACACTGATAAGTTATTACCAACAACGGGTGACGAATCAGACCGGGAAAACCAGTCGGTTAACGAGTCAAACTCCACCGGTTCGAGGTTCGATGTAGCGAAAACCGAGGGTGAGATGAAGTTAGAACCTGGACCCACCCCGGTTCATGCTGGTCCGAAAGAACCGGATCCGTCCGGGCGGAAGCCAAAACCGGTTGGAGAAGAATCGAATAACGGAAGCTACGATACCACAACTAAAATTCCAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGAGGAAAGTGGAGGAGGACTCGTCCTTGCATGACTCGGTGACTCACTCGGGGGAGGGAGGAACGAGGGAGAGCAGCGAGGTGCAGAGCTCTGCCAGCTTGACAAGAAAGAGGAAGGCGCGGCGGAGAAAGGAGGTTTCCGGCGGCGATGGTGGCGGCGAGGTTGCGCCAGAGAGCGACGAGATGGCAATGAAATCAGAACCGTTGGTTAGCGTGTTGGAGTTGATCGTACGACATGAACACGGCTCATTGTTCGAGCGCCGTCTCGAAAGCCAGGAATCGGATAGATACAAAGACATAGTGCGACAGCACGTGGACTTGGAAACCATACAATTTAGACTCCAAAAGGGTTACTATTCCTCCTGCACTAACGCATTCTTCCGCGACCTCCTACTTCTCTTCACCAACGCCACCGTGTTCTTCCCCCAAGACTCCGTCGAATCACTAGCAGCACGGAAGCTGCACCGCCTTGTCACCGTGGAGATTAAGAACCACGGCCAAGCGCAATCTGAGCCTACCCCTCAGAAGACTGACTCACCCCCTCCAAACCCACAACCAGCCAAACCAGATTCTCTCCTCTCCAAGCACAAAGCGACTCCTATATTGGTTTGCCGCAAACGCAGTTCAATCTCAGCCAAACCTTCCTTGGCCACCTTTGGCCAAAAGGGTGACCAACCAATCATCAATGAGAAGAAGGAAAAACCACTTTCTGATGCAAAACCACACTTGAAACCCTCTTCTTCTGATACAGACGAAGAGGAGCCTCCCAAGGCCAAGGAAAAGCCAGTCACTGGAGCGAGAAGCCTGAGGAGAAGCAACAAGAATATCAACAGCAACCCTGGCAATAAGAAACTACCCTCTAACACCACTCATAAAGCAGGGTCCTCGGCGAACAAGCCAGCCGAGACACTGAAACCGGAGAAGAGCAAAGGAGAGGGGGTCCCAGACAAGAAGAGGAATGCCGCCGCAGATTTCTTGAAACGGATAAAGCGAAATGCCCCAGTGGAGACGCTGAGGAGTGGTGGTGGAGGAGGAAGTAGTAGCAGCAGCAGGGGTGGTGGCAGCAGCAACAGGGGTGGTGGAGGTGGTGTTAGTGCGAAAGAGCAAAAGAAAATGGTAAATAGTGGAAAAGGGGATAAAGGGAAAGAAAGGGCTTCAAGGCATAACGGTGGAGGAGTGTCAGGAGATAAAAGGAATAAGAATATTGAGAGCAACTCTCAATCGAAGAGGAGTGTTGGGAGACCTCCAAAGAAGGCCGCAGAGACCAATGCAGTTGGTGCGAAGCGTGGGAGGGAAAGTAGTGTTAGTGCGGGCAAGGATAAACGACCCAAGAAACGTTCTAAGAAATGA 2193 0.5367 MENHQNHDPDQDLEKQRQHQTWGTWEELLLACAVKRHGFKDWDTVAMEVQSRTTRPHLLATARHCEQKFHDLSRRFANECNDDVPLPKQNGAAAGENSDHVPWLDELKKLRVAELRQEVERRDFSILSLKLEVKRLEEEKGKENDGNEDEKPDPAVPGKQRPEKDKIGGEQEKTEPANSEPEMRRLDESTTNTDKLLPTTGDESDRENQSVNESNSTGSRFDVAKTEGEMKLEPGPTPVHAGPKEPDPSGRKPKPVGEESNNGSYDTTTKIPTCESVPPSEERKVEEDSSLHDSVTHSGEGGTRESSEVQSSASLTRKRKARRRKEVSGGDGGGEVAPESDEMAMKSEPLVSVLELIVRHEHGSLFERRLESQESDRYKDIVRQHVDLETIQFRLQKGYYSSCTNAFFRDLLLLFTNATVFFPQDSVESLAARKLHRLVTVEIKNHGQAQSEPTPQKTDSPPPNPQPAKPDSLLSKHKATPILVCRKRSSISAKPSLATFGQKGDQPIINEKKEKPLSDAKPHLKPSSSDTDEEEPPKAKEKPVTGARSLRRSNKNINSNPGNKKLPSNTTHKAGSSANKPAETLKPEKSKGEGVPDKKRNAAADFLKRIKRNAPVETLRSGGGGGSSSSSRGGGSSNRGGGGGVSAKEQKKMVNSGKGDKGKERASRHNGGGVSGDKRNKNIESNSQSKRSVGRPPKKAAETNAVGAKRGRESSVSAGKDKRPKKRSKK 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1998g00006 730 SMART bromo_6 339 448 IPR001487 GO:0005515
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 549 578 - -
Gabi1998g00006 730 SUPERFAMILY Homeodomain-like 16 54 IPR009057 -
Gabi1998g00006 730 Gene3D - 338 453 IPR036427 GO:0005515
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 444 475 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 679 693 - -
Gabi1998g00006 730 CDD Bromodomain 350 443 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 584 615 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 495 730 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 138 344 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 260 275 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 622 637 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 653 675 - -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 138 191 - -
Gabi1998g00006 730 SUPERFAMILY Bromodomain 347 448 IPR036427 GO:0005515
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 507 548 - -
Gabi1998g00006 730 Pfam Myb-like DNA-binding domain 20 54 IPR001005 -
Gabi1998g00006 730 Gene3D - 11 82 - -
Gabi1998g00006 730 CDD SANT 21 53 IPR001005 -
Gabi1998g00006 730 ProSiteProfiles Bromodomain profile. 358 429 IPR001487 GO:0005515
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 277 294 - -
Gabi1998g00006 730 Pfam Bromodomain 353 432 IPR001487 GO:0005515
Gabi1998g00006 730 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 5 730 - -
Gabi1998g00006 730 SMART sant 18 75 IPR001005 -
Gabi1998g00006 730 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1998g00006 Gabi-Chr1998 120739 127336 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1998g00006 Bromodomain 7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1998g00006 - - gmx:100779988 961.829