Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1995g00022 ATGAGTTTCCGAATTATGGGGTTATTCAGATATGGAACCTTGTTTTTCAATGTGCTGCTTCTGTTGTTTGAAACTTGTTTGGCCAGCGATCAACACATTCGCCAGATATATCCTGGCTTCAGTGCATCTCGACTAGATTGGAACGACCATGGTGGGTTTTTCTTGCTATCAAACAGCTCAGCTTTCGCTATGGGATTCTTTGGTACCTTGGATGTTACATTGTTTGTTTTAGTTGTCATTCACTTGAATAGCTACAAAGTGGTTTGGACTGCCAATAGAGGCTTACTTGTTAGAAATAATGATAAGTTTGTGTTTGATCATAGTGGGAATGCATATTTGGAAAGTGGGAACGGTGTAGTTTGGGCAACAAATACAACAGGACAAAAAGTTAGAGCCATGGAATTGTTGGACTCAGGGAACTTGGTGTTGCTTGGGGAAAATGGGACAATGATTTGGCAGAGTTTTAGTCATCCCACTGATACCCTTTTGCCAGGTCAAGCTTTTGTGGAAGGAATGAGACTCAGAAGCTTCCCCAATCACATGAACTTGTTTCATTATTTGGGTTATATAGCAGGTGATTTGGTTCTCTATGCAGGATTTGAACCTCCACAAAGGTACTGGTCCCTATCAGGGGAAGCCCAGGGAAGAAAGAATTTCACGGGTAAGGTTCACTCTGCTTCTCTGGTGTCCAATTCATGGAATTTTTATGGTGAAAGTGGAGCTTTGCTGTGGAAAACTGTCTTCTCTGACCATTCAGATAATAAGTCATTGTGGGTTGCTATTTTGGACCCCAATGGTGCAATCACTTTCTATGATCTTAGTAAGGGGAGGTCTGCTACACCTGAGGCTATTAAAATTCCACAAGACCCTTGTGGCATTCCTGAGCCTTGTGATCCTTACTATGTTTGCTTTTTTGAAAACTGGTGTGAATGTCCTTCACTTCTCAAATCTCGTTTTAATTGCAAACCTCCCAACATCTCAACCTGTTCTAGGAGTTCAACAGAACTTGTGTATGTTGGTGAAGAGCTTGATTATTTTGCTATCAAGTATGTTGCACCAGTTTCAAAATCAACCCTGAATGCTTGCAAAGAAGCTTGTTTAGGAAACTGCTCATGCCTTGTGCTTTTCTTTGAAAACAGTACTGGTAGATGCTTTCATTTTGATCAGACTGGGAGTTTCCAACGCTCTAAGGGAAGCACCGGAGGTTATGTTTCATTTATGAAAGTATCCATCAATGGTGATGGAAATGGCAACAAAAGTGGAAGAAATGACACGCTGCTAGTTGTTGTCATAGTAATTCTTACAGTTCTGGTTATAGTTGGCCTTGTAACTGGATTCTGGTACTATAACAAGAAGAAGAGTTCTGCTGAGTATACACAAGACATGTTGGAGGAAGATGATTTCTTGGACAGTCTTTCAAGTATGCCTGCTCGATTTACTTATAGTGCTCTTTCTAGAGCAACTAAGGACTTCTCCACAAAAATTGGTGAAGGAGGTTTTGGCTCAGTGTATCTAGGTGTGCTTGAAGATGGTAACCAGTTGGCTGTGAAAAAATTGGAAGGTGTTGGACAAGGGGCAAAAGAGTTTAAAGCAGAAGTGTCCACAATTGGAAGTATTCATCATGTTCATCTAGTCAAGCTGAAAGGGTTCTGTGCTGAGGGTCCTCATCGCCTTCTTGTCTATGAATACATGACAAGGGGTTCTTTGGACAAATGGATATTCAAGAACAGTGAAAATAATTTCCTGTTGAATTGGGATACAAGGTACAACATTGCAATAGGCACGGCAAAGGGATTGGCCTATCTTCATGAGGAGTGTGAAGTGAGGATTATCCATTGTGATATTAAACCGCAAAATGTTCTTCTTGATGAGAATTTCATGGCTAAAGTTTCAGATTTTGGATTGGCTAAGCTAATGAGCCGAGAGCAGAGCCATGTGTTTACAACTCTAAGGGGCACAAGAGGGTATCTAGCACCAGAATGGATTACTAACTATGCAATTTCAGAGAAGAGTGATGTATTCAGCTATGGCATGGTCTTGCTTGAGATTATTGGAGGAAGGAAGAACTATGATCAGTGGGAAGGTTCGGAGAAAGCACATTTTCCATCTTATGTGTTCAGAATGATGGATGAAGGAAAACTGAAAGAAGTACTTGACGAAAAGATAGATATTGATGAGAAGGATGAAAGAGTTGTCACTGCTCTTAGAGTAGCTCTTTGGTGTATACAAGATGACATGAATTTGAGGCCTTCAATGACTAAGGTAGCTCAAATGCTAGAAGGTCTTTGCCCTGTACCTGAGCCTCCCTCATTATCTCAATCGTGTACTTATTCAGCTTTCTTGAAAATGAGTAGTGGAGAAGCTACTTCATCTAGTATTTATACTAATGTACCCCAGTCCTGTGTCCAGTTATCAGGACCAAGATGA 2427 0.4079 MSFRIMGLFRYGTLFFNVLLLLFETCLASDQHIRQIYPGFSASRLDWNDHGGFFLLSNSSAFAMGFFGTLDVTLFVLVVIHLNSYKVVWTANRGLLVRNNDKFVFDHSGNAYLESGNGVVWATNTTGQKVRAMELLDSGNLVLLGENGTMIWQSFSHPTDTLLPGQAFVEGMRLRSFPNHMNLFHYLGYIAGDLVLYAGFEPPQRYWSLSGEAQGRKNFTGKVHSASLVSNSWNFYGESGALLWKTVFSDHSDNKSLWVAILDPNGAITFYDLSKGRSATPEAIKIPQDPCGIPEPCDPYYVCFFENWCECPSLLKSRFNCKPPNISTCSRSSTELVYVGEELDYFAIKYVAPVSKSTLNACKEACLGNCSCLVLFFENSTGRCFHFDQTGSFQRSKGSTGGYVSFMKVSINGDGNGNKSGRNDTLLVVVIVILTVLVIVGLVTGFWYYNKKKSSAEYTQDMLEEDDFLDSLSSMPARFTYSALSRATKDFSTKIGEGGFGSVYLGVLEDGNQLAVKKLEGVGQGAKEFKAEVSTIGSIHHVHLVKLKGFCAEGPHRLLVYEYMTRGSLDKWIFKNSENNFLLNWDTRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDENFMAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMVLLEIIGGRKNYDQWEGSEKAHFPSYVFRMMDEGKLKEVLDEKIDIDEKDERVVTALRVALWCIQDDMNLRPSMTKVAQMLEGLCPVPEPPSLSQSCTYSAFLKMSSGEATSSSIYTNVPQSCVQLSGPR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1995g00022 808 Gene3D - 49 157 IPR036426 -
Gabi1995g00022 808 ProSiteProfiles Protein kinase domain profile. 489 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1995g00022 808 FunFam S-receptor-like kinase 5 564 768 - -
Gabi1995g00022 808 ProSiteProfiles PAN/Apple domain profile. 329 410 IPR003609 -
Gabi1995g00022 808 PIRSF SRK 6 805 IPR024171 GO:0004674
Gabi1995g00022 808 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 47 770 - -
Gabi1995g00022 808 SMART blect_4 46 158 IPR001480 -
Gabi1995g00022 808 SUPERFAMILY Protein kinase-like (PK-like) 472 760 IPR011009 -
Gabi1995g00022 808 ProSiteProfiles Bulb-type lectin domain profile. 40 156 IPR001480 -
Gabi1995g00022 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 209 IPR036426 -
Gabi1995g00022 808 CDD B_lectin 51 158 IPR001480 -
Gabi1995g00022 808 Pfam D-mannose binding lectin 87 168 IPR001480 -
Gabi1995g00022 808 FunFam serine/threonine-protein kinase PBS1-like 457 563 - -
Gabi1995g00022 808 Gene3D Phosphorylase Kinase; domain 1 451 563 - -
Gabi1995g00022 808 Pfam Protein kinase domain 492 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1995g00022 808 SMART serkin_6 489 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1995g00022 808 Gene3D Transferase(Phosphotransferase) domain 1 564 763 - -
Gabi1995g00022 808 CDD STKc_IRAK 495 762 - -
Gabi1995g00022 808 CDD PAN_AP_plant 354 410 - -
Gabi1995g00022 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Gabi1995g00022 808 ProSitePatterns Protein kinases ATP-binding region signature. 495 518 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1995g00022 Gabi-Chr1995 258821 261709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1995g00022 427 769 Receptor kinase-like Gene Family AT5G20050 43.562 1.35e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi1995g00022 Pkinase 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1995g00022 - - gmx:100786024 1347.41