Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1991g00007 ATGGTTTCTGGCTCTGATATTTCGAGGGTGTTCAATCCCACATCGGATACTTCAGGTGCTTTAAATTGGATTTCAAGAGGTGGGTTGGTAAATATTGACAAGGGAGAACCTTTGAGGTCACCTTCAATTATAGGGCAGAAAAATATTTGTGAGCCCAAAGCTTTAGCGGCTTTGAAGAGACATAGTGAAGCAGAAAAGAGGAGAAGGAAGAGAATTAATGGCCATCTTGCAACACTCCGTGGACTTGTCCCTTCCACTGAAGAGATGGATAAAGCAACATTACTGGGAGAAGTTATTAGTCAAATAAAGGAATTGAAGAAGAATGCAGCTGAAGCAAGCAAAGGTTTTCTAATCCCAATGGACACTGATGAAGTGAAAGTAGAACCATGTGATGATGATGAAGAAGGAGGATATGGATCAATGTCTTATAAGGCATCTGTTTGTTGTGATTATCGACCTGAGCTACTATCTGAGCTAAGAAAAACACTTGATGCACTTCAACTACAATTGGCACTGAGTTCGGTACTTGATAAGGCTTCTAACTCACTCGAGTACTCCCTAAGAACTTCAGATCCAACCAAACGGTGA 588 0.4099 MVSGSDISRVFNPTSDTSGALNWISRGGLVNIDKGEPLRSPSIIGQKNICEPKALAALKRHSEAEKRRRKRINGHLATLRGLVPSTEEMDKATLLGEVISQIKELKKNAAEASKGFLIPMDTDEVKVEPCDDDEEGGYGSMSYKASVCCDYRPELLSELRKTLDALQLQLALSSVLDKASNSLEYSLRTSDPTKR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1991g00007 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Gabi1991g00007 195 PANTHER TRANSCRIPTION FACTOR BHLH30 42 170 IPR045847 GO:0003700|GO:0006355
Gabi1991g00007 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 111 IPR036638 GO:0046983
Gabi1991g00007 195 Pfam Helix-loop-helix DNA-binding domain 60 105 IPR011598 GO:0046983
Gabi1991g00007 195 Gene3D - 55 114 IPR036638 GO:0046983
Gabi1991g00007 195 CDD bHLH_AtAIG1_like 51 129 - -
Gabi1991g00007 195 SMART finulus 62 111 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1991g00007 Gabi-Chr1991 118778 120358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1991g00007 53 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.000 2.45e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1991g00007 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1991g00007 - - gmx:100804756 219.935