Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi198g00009 ATGGAAGAACAGCCAACTGCACTTCAGGTAGAATCTGAAACAGAATTTAATGATGAAATTTGGGAAGTCACGGACGAATCATCTTGTGCAGAAGCTAGAATTAGCTGCATCCCCCATGCGGAAACTGCCACCTCATCTGATACCAGAACCGAGTTCAGTGGGAATAATACTGTGGAAGGTTGTTGCAGAAATGTTGCAACAAGTAGGCAGAGACCATACTTATCTGAATGTAAGGAGCTAGTTCCTCCATCTCATGTAAGTGCTGATCATAGTCCTCATGGATTTTATAGGGATAGTAGCAACATAGCTAGTACTTCATTTGTAGAACAGATGTCTTCCAATCTAGTCTCTGATAATGTTTCTGTTAACAAGGATGCAGTCATTAACATTGGTAATTCAGTGGATAGTGGTGACTCTCAAATTTCTCACGAGACAATGCATCAAGAGCATGGAAATTCCCGTTCTAGTGAAATTTCTATTGAGAATCATTCCAGTGCATTTATAGCTATCCAGAGTTCTGTTTCCAGGCCTGTTACCGACATTTCCAATTTACCAGTAACTTCTCAATTGCGAGAAGATGAACCTTCCCAAGAGACAACACCTTCAAGTTCAGGTTTTCTTGTGTCCAGTCATGAAACAGGACAGGGAAATCAAAGCGTGCTTCCAGTTGATGTGATAGCAATATCGTCCAACATTTTGTCTGATAGTACTGCTGGCGACAGTGATCAGGATGCCAGAAGGAATGGTAGAAGACTATTTTGGGATGCCTTTTTGCGACATAGTTCTAGAAGGTTTGGTGATTCTCCCACCATTGTCCTCTCCGCTAGCAATGCTGAGGATCTAGGATCTCAAGAACAATTGCTTGTTAATTTGGGTGTTGATTTCCCAAATGATGGGGTTGGAGGTGATTCGAGACATCTGGGCAATAGAATTAACAGATTTAATGAACAAAGGCAGAACTCAAGATCTGAGATCTGGGAAAGGCTTCATGGTGGCCTTGATGGGATTGGTCGTTCGAATTCTTCTTGTCCCTTAGGACTTCATGCAGATGGTGTGTGCTCTTGTGAGTCTTTTGCAATGGATGAGGAATCTAGCATTCGAGCAAGAGTTTCTAGAATAGTCATGCTGGCTGAAGCATTGTTTGAGTTTTTGGAAGAGATCCATCGGCAACCTCTATCACTTTACCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGATTCTCTCCCTCTGAAGTCCCACAAAAAGGTTGATGCACATGGCAACACTGATGCTGAACAATGTTACATATGCCTGGATGAGTATGAAGAAGGGGAACAAATACGACTTCTTCCTTGCAACCACGAGTATCACATGTCGTGTGTTGATAAATGGCTCAAAGAAATTCATGGTGTTTGTCCGCTTTGTCGTGGCAATGTTTGTAGTGGGTACAGTGAATCTTCTGCCTCTGACACTGAAGTATCGTCTCGTTGA 1479 0.4253 MEEQPTALQVESETEFNDEIWEVTDESSCAEARISCIPHAETATSSDTRTEFSGNNTVEGCCRNVATSRQRPYLSECKELVPPSHVSADHSPHGFYRDSSNIASTSFVEQMSSNLVSDNVSVNKDAVINIGNSVDSGDSQISHETMHQEHGNSRSSEISIENHSSAFIAIQSSVSRPVTDISNLPVTSQLREDEPSQETTPSSSGFLVSSHETGQGNQSVLPVDVIAISSNILSDSTAGDSDQDARRNGRRLFWDAFLRHSSRRFGDSPTIVLSASNAEDLGSQEQLLVNLGVDFPNDGVGGDSRHLGNRINRFNEQRQNSRSEIWERLHGGLDGIGRSNSSCPLGLHADGVCSCESFAMDEESSIRARVSRIVMLAEALFEFLEEIHRQPLSLYLSMVSLPAPESIVDSLPLKSHKKVDAHGNTDAEQCYICLDEYEEGEQIRLLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCSGYSESSASDTEVSSR 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi198g00009 492 MobiDBLite consensus disorder prediction 142 156 - -
Gabi198g00009 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 477 IPR013083 -
Gabi198g00009 492 Pfam Ring finger domain 429 472 IPR001841 -
Gabi198g00009 492 SUPERFAMILY RING/U-box 408 476 - -
Gabi198g00009 492 MobiDBLite consensus disorder prediction 133 157 - -
Gabi198g00009 492 SMART ring_2 430 471 IPR001841 -
Gabi198g00009 492 FunFam Putative RING zinc finger domain superfamily protein 398 477 - -
Gabi198g00009 492 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 491 - -
Gabi198g00009 492 ProSiteProfiles Zinc finger RING-type profile. 430 472 IPR001841 -
Gabi198g00009 492 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi198g00009 Gabi-Chr198 108197 112250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi198g00009 340 476 C3H Transcription Factor Family AT5G45290 50.000 2.65e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi198g00009 - - gmx:100783604 605.905