Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi198g00005 ATGGCTGGAATGCTTCCGGGAGTTGAATGTGCTCGAAGGAGACGGTTCCATATGAGTGGAGGGTACTTGGATTCACAATCCATGGTTACCCATAATTCAACAAGACACTCTTCTTTCTGTTTGTATGCAAGTAACCATGAATCTCGTCTTTCCTCATCCTCTTCATTGCAAAGAAACATGTTATACCAAGCAAACCCAGATGAGAATATGGTAGGAGCAGCCAGAGAAGCCAGACAGAGATTGGATGACAAGTTCAGAGGACAAAGGAAATCAGAAAACAAAAGGCAAAACAGCATAAAGTGTGTGGAGGGCAGAAAACCAAGGTTAGTTGAATTGCTTACGGAGGTATATGAGTCAAAGAAAAGTGGTTCAAGTTGGTTCAGTTGGACCAAATTGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCGGTGTGCTTGGAATCATTCAGGGTTGGAGAGACACTATTGCATCTCCCTTGTGCCCATAGGTTCCATTCCAGATGCTTGAAACCATGGTTAGAAAATAATTCTCATTGTCCATGCTGCAGAACCGCCATTCATTCCCCTTAG 570 0.4386 MAGMLPGVECARRRRFHMSGGYLDSQSMVTHNSTRHSSFCLYASNHESRLSSSSSLQRNMLYQANPDENMVGAAREARQRLDDKFRGQRKSENKRQNSIKCVEGRKPRLVELLTEVYESKKSGSSWFSWTKLSWKASEQEDCAVCLESFRVGETLLHLPCAHRFHSRCLKPWLENNSHCPCCRTAIHSP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi198g00005 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 188 IPR013083 -
Gabi198g00005 189 SUPERFAMILY RING/U-box 125 188 - -
Gabi198g00005 189 FunFam Zinc finger family protein 116 188 - -
Gabi198g00005 189 PANTHER SI:CH211-59O9.10 51 188 - -
Gabi198g00005 189 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Gabi198g00005 189 SMART ring_2 142 182 IPR001841 -
Gabi198g00005 189 Pfam Ring finger domain 141 183 IPR001841 -
Gabi198g00005 189 CDD RING-H2_PA-TM-RING 141 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi198g00005 Gabi-Chr198 63210 64635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi198g00005 51 186 C3H Transcription Factor Family AT1G49850 32.911 1.51e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi198g00005 - - gmx:100527583 286.189