Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1989g00004 ATGGGTCGTTTCCCGTGTTTTGGGTCGAAGAAGAAGGCCAAGGATAAGAACCTCAAGCCTCGGGAGGAGGAAGGAAACAATGTTGGGAGGAACCGTAACTCTGTAGAGACTGTCTCTGAGAGTTCTTCAGTTGAAATGACATGGTTTGACACAGGACTGGGATCAGAAGCAACTCAAACAGAGGAGACTGGCAGTTCTAGTAAGGCTAAGATATTTACCTTCCGAGAGCTTGCAACGGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGTTTTGGGAGTGTTTACAAAGGGAAGATAGAGAACATTGATCAGGATGTAGCTATTAAAAGACTTGATACTACTGGGCTCCAAGGGGAGAAAGAATTCCTAATAGAAGTTCTAATGCTCTGTCTTCTACGCCATCCCAACCTTGTTAATTTGGTTGGTTACTGTGCTGAGGGGGATCAACGTCTTCTTGTGTATGAATACATGCCTAACGGATCCTTAGAGTCTCATCTTCATGAACTTGCACCTGATAAAGAACCGCTTGATTGGAATACTAGAATGAAGATAGCTGCTGGGGCATCAAAAGGACTAAATTATCTGCATCATGAAGTAACGCCTTCTGTTATATACAGGGATCTGAAACCATCCAACATATTATTAGATGAAGACTTTCACCCAAAACTTTCTGATTTTGGGCTTGCAAAATTTGGTCCATCTGAAGACCAATCCTATGTTTCCACTAGGGTCATGGGAACACATGGTTATTGTGCCCCTGAGTATGCCACTAGTGGGAAATTAACAATGAAATCTGACATTTACAGTTTTGGGGTTCTGCTATTGGAGCTAATTACTGGACGTTATGCTTATGATGATACCCGTGACCGTGAAAAGCATCTTGTTGACTGGGCACGCCCAATGTTCAGAGACAAAAGGCAGTTTCCAAGATTGGTAGATCCGCAGTTGCAAGATCGCTATCCGGCATCTGGTCTAAGGATGGCCGTTGAATTGGCAAGCATTTGTCTCCGAGAAGAGCAACGTCACCGGCCGGACGCAGGTGATCTAGTGCATGCTCTAAATTACTTGTCATCCAAGGAATACACCCCAAAAGTACCCAACACAGTTAACACAGAAGATGTGGGCAAGAGTAGTGACTCCCCAAAAGGAAAATCTTTGATTTTGGCTGAAGACTCACAAAGAGAGAAAGCTGTTGCAGAGGCCAAGCAGTGGGGAGAGACTTGCAGAGAAAAGAGACGACAAAGTGGCCAAAGTAGTCCTGAGTAA 1278 0.4405 MGRFPCFGSKKKAKDKNLKPREEEGNNVGRNRNSVETVSESSSVEMTWFDTGLGSEATQTEETGSSSKAKIFTFRELATATKNFRDETFIGQGGFGSVYKGKIENIDQDVAIKRLDTTGLQGEKEFLIEVLMLCLLRHPNLVNLVGYCAEGDQRLLVYEYMPNGSLESHLHELAPDKEPLDWNTRMKIAAGASKGLNYLHHEVTPSVIYRDLKPSNILLDEDFHPKLSDFGLAKFGPSEDQSYVSTRVMGTHGYCAPEYATSGKLTMKSDIYSFGVLLLELITGRYAYDDTRDREKHLVDWARPMFRDKRQFPRLVDPQLQDRYPASGLRMAVELASICLREEQRHRPDAGDLVHALNYLSSKEYTPKVPNTVNTEDVGKSSDSPKGKSLILAEDSQREKAVAEAKQWGETCREKRRQSGQSSPE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1989g00004 425 SUPERFAMILY Protein kinase-like (PK-like) 64 357 IPR011009 -
Gabi1989g00004 425 MobiDBLite consensus disorder prediction 366 425 - -
Gabi1989g00004 425 ProSiteProfiles Protein kinase domain profile. 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1989g00004 425 MobiDBLite consensus disorder prediction 1 43 - -
Gabi1989g00004 425 MobiDBLite consensus disorder prediction 366 380 - -
Gabi1989g00004 425 PANTHER OS07G0668900 PROTEIN 34 368 - -
Gabi1989g00004 425 FunFam probable serine/threonine-protein kinase RLCKVII 56 160 - -
Gabi1989g00004 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gabi1989g00004 425 Pfam Protein kinase domain 85 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1989g00004 425 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Gabi1989g00004 425 SMART serkin_6 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1989g00004 425 Gene3D Transferase(Phosphotransferase) domain 1 161 381 - -
Gabi1989g00004 425 CDD STKc_IRAK 90 358 - -
Gabi1989g00004 425 MobiDBLite consensus disorder prediction 392 425 - -
Gabi1989g00004 425 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Gabi1989g00004 425 MobiDBLite consensus disorder prediction 8 29 - -
Gabi1989g00004 425 FunFam Serine/threonine-protein kinase PBS1 161 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1989g00004 Gabi-Chr1989 124430 129844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1989g00004 1 422 Glycoside Hydrolase AT3G07070 50.000 1.86e-139 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi1989g00004 Pkinase 7.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1989g00004 K13430 - gmx:100805675 562.377