Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1977g00016 ATGGAGAATAATCAAAAGGAGGAGGAGGAGGAGGTGCAAGTTGGGGAGGAGAAAGATGAGGTGGGGCCCATGGGTGGGAAGGAGAAGGAGGACGAAGAAGAAGAAGAGGAGGATCAAGGAGAAGTTGGTTCGAGCTTGACAATGGAGAGGGTTGCTGTAGCCAAAAAATTCATTGAGAACCATTACAGGGCTCAAATGAAACTCATCCAAGATCGCAAAGAGAGGCGTTCAGTGCTACAAAAGAAGTTAGAGTCTTCTCACGTACCAGAAGAGGAACAGATCAATCTACTGAAGGATTTAGAGCGCAAGGAGACCGAGTATATACGATTAAAAAGACATAAAATATGCGTTGATGATTTTGACCTTCTAGCCATTATTGGCAGGGGAGCCTTTGGGGAGGTAAGACTTTGTCGGGAGAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAGTCTGAAATGCTTAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAACCTACTTGCAGAAGTTGCCAGTGACTGCATTGTGAAACTCTATTACTCGTTTCAGGATGCTGAACATTTATATCTGATAATGGAATATTTACCTGGTGGTGATATAATGACATTGTTGATGAGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAGAGTGTTTTGGCTATAGAGTCTATTCATAAACACAACTACATCCATCGAGATATAAAACCTGACAACCTTCTATTGGACAAAAATGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCAAATTTATCGTCTATAAATGAAAATGAAATCCTTGATGATGAGAACATGAATGATACCATGGATGTAGATGGAGCTTTCCGAAATAGCAGAAACGGTAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATGAACCGGAGGAAGTTGGCATTTTCCACTGTTGGAACTCCAGATTATATTGCTCCGGAAGTGTTACTGAAAAAGGGTTACGGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTATGAGATGCTTGTTGGTTACCCCCCATTTTACTCTGATGAGCCCGTAACAACTTGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTTCCGGATGAGGCAAGATTGACGCCTGAAGCAAAGGATCTTATATGTGGTTTGCTTTGTGGTGCTCAACATAGGCTCGGTACTGGAGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAAAGATGTCGTATGGGATAAGCTCTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGGGAGCTTGACACTCAGAATTTTATGAAATTTGATGAGGTTGATCAACCAAAACCAGCTAGAACTGGATCCGGACCAATCAGAAAGACGCTCTTAACTCCTCAAGATCTCAGTTTCGTTGGCTATACATATAAGAATTTTGCTGCTGTCAAGGGGATGAATCTTTCTACTGAAAACGGGAAGTTGTTACCATCACGGTCAATTGACTCCTCAATCAGTAATGGACCTATCTTTGATTACTACTCATCAATATGTTTTGTTCAACTGTTCTAA 1614 0.4145 MENNQKEEEEEVQVGEEKDEVGPMGGKEKEDEEEEEEDQGEVGSSLTMERVAVAKKFIENHYRAQMKLIQDRKERRSVLQKKLESSHVPEEEQINLLKDLERKETEYIRLKRHKICVDDFDLLAIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASDCIVKLYYSFQDAEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEILDDENMNDTMDVDGAFRNSRNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPVTTCRKIVHWKNHLKFPDEARLTPEAKDLICGLLCGAQHRLGTGGADEIKAHPWFKDVVWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDQPKPARTGSGPIRKTLLTPQDLSFVGYTYKNFAAVKGMNLSTENGKLLPSRSIDSSISNGPIFDYYSSICFVQLF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1977g00016 537 FunFam Non-specific serine/threonine protein kinase 326 445 - -
Gabi1977g00016 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 428 501 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi1977g00016 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Gabi1977g00016 537 CDD STKc_NDR_like 118 492 - -
Gabi1977g00016 537 FunFam Non-specific serine/threonine protein kinase 446 456 - -
Gabi1977g00016 537 Gene3D Transferase(Phosphotransferase) domain 1 326 445 - -
Gabi1977g00016 537 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Gabi1977g00016 537 ProSiteProfiles Protein kinase domain profile. 120 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1977g00016 537 CDD MobB_NDR_LATS-like 54 115 - -
Gabi1977g00016 537 SMART serkin_6 120 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1977g00016 537 MobiDBLite consensus disorder prediction 1 16 - -
Gabi1977g00016 537 Pfam Protein kinase domain 319 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1977g00016 537 Pfam Protein kinase domain 123 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1977g00016 537 SMART pkinase_C_6 428 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi1977g00016 537 Gene3D Phosphorylase Kinase; domain 1 118 203 - -
Gabi1977g00016 537 SUPERFAMILY Protein kinase-like (PK-like) 103 471 IPR011009 -
Gabi1977g00016 537 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Gabi1977g00016 537 FunFam Non-specific serine/threonine protein kinase 81 203 - -
Gabi1977g00016 537 Gene3D Phosphorylase Kinase; domain 1 446 456 - -
Gabi1977g00016 537 Gene3D Transferase(Phosphotransferase) domain 1 204 269 - -
Gabi1977g00016 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 462 - -
Gabi1977g00016 537 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1977g00016 Gabi-Chr1977 218350 230403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1977g00016 32 503 AGC Kinase Gene Family AT4G33080 78.224 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gabi1977g00016 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1977g00016 K08790 - gmx:100811359 864.759