Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1977g00008 ATGGATATAACTGGTCTAAAGCTTATGGCAAATACAGCAGCAACATTAATATTAAATCCTGCAATTGAAGGTTGTCAATCCTACTCTGTTGGAAGTGAAAACCACACAAATATTAGTCCACAACACCAAATTACACCATCTAAAGTGGTAAATAGGAATCAGGATGGAGCTTCACTTGTCTCAGAAATGGTTATTGAAGTTAAGAATAATTGTGTCCTGACTGAAAGCCATAACCAGGCTAGAAAGGAAGATGAATTCATGTTAGCTAAGGATTTTCAGTGTATACATAATGACCAAATCTCTCAATCTGAAAAAAGCAGTCCTTGTAGGGACAAATTTGCTACTTTGAGGACTACTTGTTCTGAAATAAACTCACCAATTACCATCAAGGTTGATGATAATATCCATGGTAAGTCCTGTTTGACTGAGCCACATGCAGAGCTAGAGCCAGTGCAGAACATGGTTTCTGTTTCAATGAAACTTGAGAGTGAAAATGGAAGTGGATCAGATGGGTCTGAACCAAAACCATTTGCTGCATTTTATGAGATGCTAGAGAAGCAAACATGCACAACAAGCTGCCAGATTAGCTTGGAATTGAGTGGTACCCCTCTTTGGGGTTTTTCATCAGTTTGTGGAAGGAGACAGGAGATGGAAGATGCTATTGCTATTAAGCCTCAACTTTTTCAAGTCCCTTCACAGATGCTAATGGATGACCATGATAATGAAAACACAAAATACTCACCAATCCACCTTTTTGGAGTCTATGATGGACATGGGGGCTGTCAGGTTGCCAATTACTGCCGGGAACATCTTCATTCAGTGTTGATTGAGGAGATAGAAGCTGTAGAATCAAGTCTGGCTGAAAACAATGGGAGAGGCAACTGGGAGGACCATTGGAAAAAAGCATTCTCCAATTGCTTTCATAAAGTAGATGATGCGGTTGGAGGAGTTCATGCAGGTAATGGTGGAAGCAAGAGTGATGATGGAACTGAATCAAGTATTGAACCTGTTGGCTCCACTGCAGTGGTTGCCATTTTGAGTCAAACTCACATAATAGTTGCAAATTGTGGAGATTCAAGAGCAGTCTTGTGTCGTGGAAAAGAAGCATTGCCATTGTCTTCTGATCACAAACCAAATAGAGAGGACGAGTGGGAAAGGATAGAAGCTGCAGGAGGAAGGGTCATACAATGGAATGGCTACCGAGTTCTAGGTGTTTTGGCAGTGTCAAGATCCATAGGTGATAGATACTTGAAACCATGGATAATTCCTGACCCAGAAGTGAAGTGTGTCCATCGAGAGAAAAATGATGAGTGCCTTATTCTAGCCAGTGATGGTTTATGGGATGTCATGACAAATGAAGAAGCATGTGACATTGCACGAAAGCGAATCCTTCTTTGGCATAAGAAGAATGGCAACAACGATTCAAGACAACAAGGCCATGGAGTTGATCCTGCTGCTCACTCTGCTGCTGAGTATCTTTCTAAACTTGCGCTCCAAAGAGGAAGCAAAGATAATATTTCTGTTATTGTTATAGACTTGAAGGCTCAAAGAAAATTAAAGAAAAAAGCATAA 1572 0.4065 MDITGLKLMANTAATLILNPAIEGCQSYSVGSENHTNISPQHQITPSKVVNRNQDGASLVSEMVIEVKNNCVLTESHNQARKEDEFMLAKDFQCIHNDQISQSEKSSPCRDKFATLRTTCSEINSPITIKVDDNIHGKSCLTEPHAELEPVQNMVSVSMKLESENGSGSDGSEPKPFAAFYEMLEKQTCTTSCQISLELSGTPLWGFSSVCGRRQEMEDAIAIKPQLFQVPSQMLMDDHDNENTKYSPIHLFGVYDGHGGCQVANYCREHLHSVLIEEIEAVESSLAENNGRGNWEDHWKKAFSNCFHKVDDAVGGVHAGNGGSKSDDGTESSIEPVGSTAVVAILSQTHIIVANCGDSRAVLCRGKEALPLSSDHKPNREDEWERIEAAGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVKCVHREKNDECLILASDGLWDVMTNEEACDIARKRILLWHKKNGNNDSRQQGHGVDPAAHSAAEYLSKLALQRGSKDNISVIVIDLKAQRKLKKKA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1977g00008 523 ProSitePatterns PPM-type phosphatase domain signature. 251 259 IPR000222 GO:0043169
Gabi1977g00008 523 ProSiteProfiles PPM-type phosphatase domain profile. 204 513 IPR001932 -
Gabi1977g00008 523 PANTHER PROTEIN PHOSPHATASE 157 513 IPR015655 GO:0004722|GO:0006470
Gabi1977g00008 523 SMART PP2C_4 194 511 IPR001932 -
Gabi1977g00008 523 SUPERFAMILY PP2C-like 200 514 IPR036457 -
Gabi1977g00008 523 Gene3D - 193 523 IPR036457 -
Gabi1977g00008 523 CDD PP2Cc 206 513 IPR001932 -
Gabi1977g00008 523 FunFam Protein phosphatase 2C 16 192 523 - -
Gabi1977g00008 523 Pfam Protein phosphatase 2C 206 506 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1977g00008 Gabi-Chr1977 78670 81063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1977g00008 185 522 PP2C-type Phosphatase Gene Family AT4G26080 57.971 6.46e-133 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1977g00008 K14497 - gmx:100812974 673.7