Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1977g00005 ATGAAGAAAAGATGCTTAGGCCCCAGTGTCAAAGTCAATGTTCCTGCATCTGATCAGGCTTCTTTTATCAAGTTCCTGACTCAAAGTGGGTTGTTTAAAGATGGTAACCTGCTTGTCGATAGGGATGGAGTTCGAATTCTCTCTGAGAGTGAAGTGGAAGCTCAACCCCCAATTAGGCCACTAGACAACCAGCTAAGTTTGGCAGACATTGATACAATAAAAGTGATTGGAAAGGGAAATGGGGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAGTTTTTTGCATTGAAGGAAATTCAAGTGAATATTGAGGAGTCCATACTCAAGCATATAGCACAAGAGCTAAAAATAAATCAATCAGCACTGTGTCCTTATGTTGTTATCTGCTACCAGTCGTTCTATCACAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGATCCTTAGAAGATCTTTTGAACAAAGTTAAGACAATTCCAGAGCCATATCTTTCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAACATATTATCCATAGGGACTTAAAACCTTCAAATCTGCTTATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTTAGTGCAATCATGGAAACTACTTCTGGTCAAGCACATACTTTCATTGGCACATACAACTACATGTCTCCAGAGAGAATCAATGGAATCCAGCATGGCTACAACTACAAAAGTGATATATGGAGCTTGGGACTGATCCTGCTTAGGTGTGCTACGGGGCTGTTTCCTTATACACCACCAGATCAAAGTGAAGGGTGGGAAAGTATTTTCCAGCTTATTGAAGCCATTGTTGAAAAACCTCCCCCCAGTGCTCCATCTGATCAATTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACTATCAGCTCCGAACCTTTTGAGGCATCCTTTTATCAACATGTACGAGGACTTGGATGTGGATCTTTCAGCTTACTTCTCCAATGCAGGATCTACACTTGCAACCATATAA 1071 0.4043 MKKRCLGPSVKVNVPASDQASFIKFLTQSGLFKDGNLLVDRDGVRILSESEVEAQPPIRPLDNQLSLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIQVNIEESILKHIAQELKINQSALCPYVVICYQSFYHNGVISIILEYMDGGSLEDLLNKVKTIPEPYLSAICKQVLKGLMYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMETTSGQAHTFIGTYNYMSPERINGIQHGYNYKSDIWSLGLILLRCATGLFPYTPPDQSEGWESIFQLIEAIVEKPPPSAPSDQFSPEFCSFISACLQKNPRDRLSAPNLLRHPFINMYEDLDVDLSAYFSNAGSTLATI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1977g00005 356 Gene3D Transferase(Phosphotransferase) domain 1 150 353 - -
Gabi1977g00005 356 CDD PKc_MAPKK_plant_like 68 336 - -
Gabi1977g00005 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gabi1977g00005 356 SUPERFAMILY Protein kinase-like (PK-like) 67 338 IPR011009 -
Gabi1977g00005 356 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 35 347 - -
Gabi1977g00005 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1977g00005 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1977g00005 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Gabi1977g00005 356 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Gabi1977g00005 356 FunFam Mitogen-activated protein kinase kinase 6 151 351 - -
Gabi1977g00005 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Gabi1977g00005 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1977g00005 Gabi-Chr1977 65952 78489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1977g00005 17 353 MAP Kinase Kinase Gene Family AT4G26070 66.766 3.65e-168 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi1977g00005 Pkinase 1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1977g00005 K20603 - gmx:100789734 587.415