Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1975g00030 ATGTTATCGGAGTTGATGAATTATTTGACGGCCTGCTTTCGGCCAAGTTCGGATCGATATGCGCGCAGCGGTTCAGATGCTGGAGGTAAACAGGACGGGCTCTTGTGGTACAAAGACTCGGGGCAGCACTTGAATGGTGAGTTTTCAATGGCTGTGGTCCAAGCCAACAACTTGTTGGAGGATCAGAGTCATATTGAATCAGGCAGTTTGAGCTCCAGTGAATCGGGCCCTTATGGTACCTTTGTTGGTGTCTATGATGGGCATGGAGGGCCTGAGACATCACGGTTTATCAATGACCACCTAATTCACCATCTCAAGAAGCAACAATCAATGTCAGTGGATGTAATTCGCAAGTCAATCCAAGCAACAGAAGAGGGATTTATGTCACTTGTTGCCAAACAGTGGTCAATGAAACCACAAATTGCAGCTGTTGGGTCATGCTGTCTTGTCGGTGTTATTTGTAATGGAACCCTTTATATCGCAAATCTTGGTGATTCCCGGGCTGTTTTGGGAAGAGCAGTCAAGGCAACTGGGGAGGTTTTAGCCATGCAATTGTCCGCAGAGCATAATGCAGCAATAGAGTCTGTAAGACATGAGCTGCAATCTTTACACCCTGATGACTCACACATTGTTGTTTTGAAGCATAATGTATGGCGTGTGAAGGGCATTATTCAAGTTTCTAGATCTATTGGTGATGTATATCTTAAAAAGGCGGAGTTCAATAGAGAACCTCTATATGCAAAGTTTCGACTTCGCGAGCCTTTCAAGAGGCCAATATTGAGCTCAGAACCATCAATATCAGTGCACCAGTTGCAGCCACATGATCAGTTTATTATATTTGCATCTGATGGTCTCTGGGAGCACCTTAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAATCCCCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCACTTCAAGAAGCGGCAAAGAAGAGAGAAATGAGATATTCAGACCTAAAGAAAATCGACCGCGGGGTTCGCAGGCATTTCCACGATGATATCACAGTGATTGTTGTGTTTATTGACTCAAATCTTGTGAGTAGGGCAAGCTCTGTCAAGTTCACCAGTATTTCTGTTAGAGGGGGTGGTATCACCCTGCCTCCAAACACACTGGCTCCTTGTACAACACCAACTGAGGCTGGTGCTGCCTGA 1182 0.4535 MLSELMNYLTACFRPSSDRYARSGSDAGGKQDGLLWYKDSGQHLNGEFSMAVVQANNLLEDQSHIESGSLSSSESGPYGTFVGVYDGHGGPETSRFINDHLIHHLKKQQSMSVDVIRKSIQATEEGFMSLVAKQWSMKPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRAVKATGEVLAMQLSAEHNAAIESVRHELQSLHPDDSHIVVLKHNVWRVKGIIQVSRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSISVHQLQPHDQFIIFASDGLWEHLSNQEAVDIVQNNPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFIDSNLVSRASSVKFTSISVRGGGITLPPNTLAPCTTPTEAGAA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1975g00030 393 FunFam Phosphatase 2C family protein 36 361 - -
Gabi1975g00030 393 SMART PP2C_4 39 349 IPR001932 -
Gabi1975g00030 393 CDD PP2Cc 48 351 IPR001932 -
Gabi1975g00030 393 PANTHER PROTEIN PHOSPHATASE 32 349 IPR015655 GO:0004722|GO:0006470
Gabi1975g00030 393 ProSiteProfiles PPM-type phosphatase domain profile. 47 351 IPR001932 -
Gabi1975g00030 393 Gene3D - 36 361 IPR036457 -
Gabi1975g00030 393 Pfam Protein phosphatase 2C 63 320 IPR001932 -
Gabi1975g00030 393 SUPERFAMILY PP2C-like 56 352 IPR036457 -
Gabi1975g00030 393 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1975g00030 Gabi-Chr1975 263323 267766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1975g00030 1 393 PP2C-type Phosphatase Gene Family AT4G38520 75.063 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1975g00030 - K01102 jre:109006616 685.641