Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1975g00029 ATGTTATCGGAGTTGATGAATTATTTGACGGCCTGCTTTCGGCCAAGTTCGGATCGATATGCGCGCAGCGGTTCAGATGCTGGAGGTAAACAGGACGGGCTCTTGTGGTACAAAGACTCGGGGCAGCACTTGAATGGTGAGTTTTCAATGGCTGTGGTCCAAGCCAACAACTTGTTGGAGGATCAGAGTCATATTGAATCAGGCAGTTTGAGCTCCAGTGAATCGGGCCCTTATGGTACCTTTGTTGGTGTCTATGATGGGCATGGAGGGCCTGAGACATCACGGTTTATCAATGACCACCTAATTCACCATCTCAAGAGGTTTACTGCAGAGCAACAATCAATGTCAGTGGATGTAATTCGCAAGTCAATCCAAGCAACAGAAGAGGGATTTATGTCACTTGTTGCCAAACAGTGGTCAATGAAACCACAAATTGCAGCTGTTGGGTCATGCTGTCTTGTCGGTGTTATTTGTAATGGAACCCTTTATATCGCAAATCTTGGTGATTCCCGGGCTGTTTTGGGAAGAGCAGTCAAGGCAACTGGGGAGGTTTTAGCCATGCAATTGTCCGCAGAGCATAATGCAGCAATAGAGTCTGTAAGACATGAGCTGCAATCTTTACACCCTGATGACTCACACATTGTTGTTTTGAAGCATAATGTATGGCGTGTGAAGGGCATTATTCAAGTTTCTAGATCTATTGGTGATGTATATCTTAAAAAGGCGGAGTTCAATAGAGAACCTCTATATGCAAAGTTTCGACTTCGCGAGCCTTTCAAGAGGCCAATATTGAGCTCAGAACCATCAATATCAGTGCACCAGTTGCAGCCACATGATCAGTTTATTATATTTGCATCTGATGGTCTCTGGGAGCACCTTAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAATCCCCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCACTTCAAGAAGCGGCAAAGAAGAGAGAAATGAGATATTCAGACCTAAAGAAAATCGACCGCGGGGTTCGCAGGCATTTCCACGATGATATCACAGTGATTGTTGTGTTTATTGACTCAAATCTTGTGAGTAGGGCAAGCTCTGTCAAGTTCACCAGTATTTCTGTTAGAGGGGGTGGTATCACCCTGCCTCCAAACACACTGGCTCCTTGTACAACACCAACTGAGGCTGGTGCTGCCTGA 1194 0.4539 MLSELMNYLTACFRPSSDRYARSGSDAGGKQDGLLWYKDSGQHLNGEFSMAVVQANNLLEDQSHIESGSLSSSESGPYGTFVGVYDGHGGPETSRFINDHLIHHLKRFTAEQQSMSVDVIRKSIQATEEGFMSLVAKQWSMKPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRAVKATGEVLAMQLSAEHNAAIESVRHELQSLHPDDSHIVVLKHNVWRVKGIIQVSRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSISVHQLQPHDQFIIFASDGLWEHLSNQEAVDIVQNNPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFIDSNLVSRASSVKFTSISVRGGGITLPPNTLAPCTTPTEAGAA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1975g00029 397 CDD PP2Cc 48 355 IPR001932 -
Gabi1975g00029 397 Pfam Protein phosphatase 2C 63 324 IPR001932 -
Gabi1975g00029 397 SMART PP2C_4 39 353 IPR001932 -
Gabi1975g00029 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Gabi1975g00029 397 FunFam Phosphatase 2C family protein 36 365 - -
Gabi1975g00029 397 Gene3D - 36 365 IPR036457 -
Gabi1975g00029 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Gabi1975g00029 397 PANTHER PROTEIN PHOSPHATASE 32 353 IPR015655 GO:0004722|GO:0006470
Gabi1975g00029 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1975g00029 Gabi-Chr1975 263323 267766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1975g00029 1 397 PP2C-type Phosphatase Gene Family AT4G38520 76.322 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1975g00029 - K01102 jre:109006616 700.279