Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1975g00025 ATGGCCTCTCCATCTTCCCCTACAGATTCCAACCCACCCTCCGCCGTGCCGCTCCCTCTCCCCGCGGCGGCGCCACCCTCCACTCGCCGCCTTCCTCCGCCGTGCTGGACCCCCGAAGAAACCGCCGCCCTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCACCAACCTTAAGGCCACACACTGGCAAGAGGTCGCCGACGCCGTCACCGCCCGCTGCCCCAACGCTTCTCCGGCGGCCAAGACCGCCGTGCAGTGCCGCCACAAGATGGAGAAGCTCCGCAAGCGCTACCGCACCGAGATCCAGCGCCTACGGTCCCTCCCGGTGGCGCGTATCAACTCCTCATGGGTTCACTTCAAATCCATGGATTTCATGGAGAAGGGTCCCTCATCGGTGAAACCCGATCACGATAACAACCACGAAAGTCTCGATCTTGAAGATGATGACGAAGATGATTTGTACGAAAGGTTGAAATTGAAGAATGGGAGTGGCTCCAACACAAGGAGCATTAACAAATTGTACAGGAACGGAATCGCCGGTTCCGGCGCCGGCGCCGGAGCTGGGTTTCGGATTCGGATCCCAACTGGGGTTAGCGTAGCCCAACATGGGTCGAAGTTGTTTGGCAAAGTTGGTGATCAGAAATTGAACAACCCCACAAATTCTAATGGTGGTGTTGGTGTTGGTGTTGGTGGTGGTCCAACAAGGGTTGTTAAGGAAAGAAGTGGATTGGGGAAAAGGGAAAGAGAGAGGGAGAGGGAGAGGGAGAGGGACCCTGTTGGTGAAATGGTGAGTGCAATCAAGGTTTTGAGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAAATGGCGAGGGAGATTGAGACCATGCGGATGGAGATGGAAATGAAGCGTACTGAGATGATTCTGGAGTCTCAGCAGCGGATTGTTGAGGCCTTTGCCAATGCTGTTTCTGAGAAAAGGAAGAAGGGTAAGACTATACCATCACCATCAGAATCATAG 1011 0.5529 MASPSSPTDSNPPSAVPLPLPAAAPPSTRRLPPPCWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVTARCPNASPAAKTAVQCRHKMEKLRKRYRTEIQRLRSLPVARINSSWVHFKSMDFMEKGPSSVKPDHDNNHESLDLEDDDEDDLYERLKLKNGSGSNTRSINKLYRNGIAGSGAGAGAGFRIRIPTGVSVAQHGSKLFGKVGDQKLNNPTNSNGGVGVGVGGGPTRVVKERSGLGKRERERERERERDPVGEMVSAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFANAVSEKRKKGKTIPSPSES 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1975g00025 336 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 13 319 IPR044823 -
Gabi1975g00025 336 Gene3D - 36 102 - -
Gabi1975g00025 336 MobiDBLite consensus disorder prediction 1 33 - -
Gabi1975g00025 336 MobiDBLite consensus disorder prediction 242 261 - -
Gabi1975g00025 336 Pfam Myb/SANT-like DNA-binding domain 34 127 IPR044822 -
Gabi1975g00025 336 MobiDBLite consensus disorder prediction 10 33 - -
Gabi1975g00025 336 FunFam Trihelix transcription factor ASIL2 36 102 - -
Gabi1975g00025 336 Coils Coil 90 110 - -
Gabi1975g00025 336 MobiDBLite consensus disorder prediction 130 152 - -
Gabi1975g00025 336 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Gabi1975g00025 336 MobiDBLite consensus disorder prediction 213 261 - -
Gabi1975g00025 336 SMART 118neu2 43 133 IPR006578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1975g00025 Gabi-Chr1975 222579 224659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1975g00025 35 126 Trihelix Transcription Factor Family AT3G14180 35.870 4.18e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi1975g00025 Myb_DNA-bind_4 6.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1975g00025 - - qsa:O6P43_017256 377.867