Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1975g00022 ATGCCTCCAAGAAAGGTGAAGAGAGGTGCTGCGTCAAAGAGAACAACGAGGGGATCCTCAAAGCCTGCACTTGAGATTCAACAGCAGCAAGAGCCTGAAGCTGTGGATGTGAAGCATGAGGAAAAAAATCCAGTTCTTGATGCTGTGGTCGAGGAGAAACCCATTGATGCGAACCATTTGGCTCCAGAGGCAGTGCCTGATGTGAAAAACAATGAAGAGGAAGTTAAGGAGTCCATAGATGAATGTGAAAAAGGTGAACACTTAGATTTGGAGGATAATTATCCTGAGTTTGAACCCGAGGAGTATGGTGGAGTTGACTATGATGAGAAGGAAATTGAACAAGAAGAAGATCAGGAGGTGGGAGGTGAAGAAGAGGAAGAACCCGAAGAGAATGTAATTGAAGAAGAGAGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGTGCGATGATGATGTTGATGATGATGATGAGCATGCTGGTGAGGAGCAGGGGCATGAGCATGAACATGATCATGCACAGATGGATGATTTGGAAGAAGAGGAACATCGTGAAGTTGTAAAGGAGAGGCGAAAGCTGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAAGGAAGTTGGGGCGATTACTGAAGTCAGGCTGATGATGAATTCCCAGACTAAAAGAAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAACAAGCAAAACGAGCTGTGGCAGAGCTAAGAAACCCAGTGATTAATGGCAAACAATGTGGTGTTGCTCCAAGTCAGGACCACGATACTCTCTATTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTAAAGGAGAAGTTGAAACACTATGGCGTTGAAAATGTTGAGGATTTGACTTTAGTAGAAGATGGTAACAACGAGGGAATGAACCGCGGATTTGCATTTTTGGAATTCTACTCTCGTTCAGATGCTAAGGAAGCGTATAGGCGACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGACTCCTTTACTGATCCGGATGACGAAATTATGGCGCAGGTTAAAACTGTGTTTATTGATTCACTGCCTCCTTCATGGGATGAAGAGTATGTTCGTGATCTTCTTAAGAAATACGGGGAGATTGAAAAGATTGAGCTTGCTAAGAACATGCCAGCTGCCCGTAGGAATAATTTTGGTTTTATTACGTTTGGTACTCATGCTGCTGCTGTGGAATGTGCTGATAGCATTACCAGTGCGGGGTTAGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGATTGTCAAGACCTCTTCAGAGAGACCGTGGCAAACGTGTTCGTCATGGGGACTACCGTTCTGGCCGCAATTCTGGAAGATTGGCAAAGCCTTCACGGAGTCGACCTGCACCACGTAGTCGTCCTGCCCACGTGGTGAGAGGAATTGGAAGCCGTGTTCCGCCAGTTAGGCCTGTTAGTGTGAGAGATAGACGTCATGTTGCATCCATGCCAGTGAGAGCTAGGCCACTGGCTCGTCCAGCTAGATCCTATGACAGGAAATTGGCTGCACCTGTATATACAAAAAGTAGCTCGAAAAGAGATTATGATCGACGTGAGGATATGCAACCTCCAAGTAGAATTTCTGCAGATTATGGCTCTAGGTTGGCCTCTCAAAGACGCCCATCTTCTAGGGATTATCCAGCCCGTGGCTCTGGCTACGCTGAGCTGCATAGAAGTACATCTCATGCTGCACCAAGGAGAGGTTATGTGGATGATGGCTATGGCCAAAGATTCGAGAGGCCTGCTCCTCCTCCTCCTCCTCCTCCTCGTCTTAGCTATCGTGAAGCGCGCCCCCATGATTATGACTCTCTATCTGGCTCTAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACGGTATGTGGATACTGGTGCTCGGCAATCAAGACCACGTTTGGACTATGACTATGGAGGTAGCGCTTCACAGTATTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAAGTTCTATTTCTACTCAAGACTCACATGGGACATATAGCAGTCGACAGGGCATTAGTTATGGCGGAGGTTCTTTTGGTGGTAGTGATGGTGGTTTGTACTCATCAAGTTATGATGGTGATTACGTATCTCGTGGAAATGATGTTGGTGGAAGTTCGTATTCATCCATGTATCCTGGCAGGGGTGTGAGTGGTAGCAGCAGTTATATGGGTGGTGGGGGATCTAGGTCTTATTATTGA 2340 0.4556 MPPRKVKRGAASKRTTRGSSKPALEIQQQQEPEAVDVKHEEKNPVLDAVVEEKPIDANHLAPEAVPDVKNNEEEVKESIDECEKGEHLDLEDNYPEFEPEEYGGVDYDEKEIEQEEDQEVGGEEEEEPEENVIEEESDTGDEEVEYVYEEVECDDDVDDDDEHAGEEQGHEHEHDHAQMDDLEEEEHREVVKERRKLKEFEVFVGGLDKDATEHDLKKVFKEVGAITEVRLMMNSQTKRNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVAPSQDHDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDGNNEGMNRGFAFLEFYSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFTDPDDEIMAQVKTVFIDSLPPSWDEEYVRDLLKKYGEIEKIELAKNMPAARRNNFGFITFGTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLQRDRGKRVRHGDYRSGRNSGRLAKPSRSRPAPRSRPAHVVRGIGSRVPPVRPVSVRDRRHVASMPVRARPLARPARSYDRKLAAPVYTKSSSKRDYDRREDMQPPSRISADYGSRLASQRRPSSRDYPARGSGYAELHRSTSHAAPRRGYVDDGYGQRFERPAPPPPPPPRLSYREARPHDYDSLSGSKRPYTAIDDVPPRYVDTGARQSRPRLDYDYGGSASQYYGDRLGRSSLGYSGSRSSISTQDSHGTYSSRQGISYGGGSFGGSDGGLYSSSYDGDYVSRGNDVGGSSYSSMYPGRGVSGSSSYMGGGGSRSYY 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 66 92 - -
Gabi1975g00022 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 379 436 IPR000504 GO:0003723
Gabi1975g00022 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
Gabi1975g00022 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 348 IPR000504 GO:0003723
Gabi1975g00022 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 771 - -
Gabi1975g00022 779 SMART rrm1_1 201 274 IPR000504 GO:0003723
Gabi1975g00022 779 SMART rrm1_1 378 453 IPR000504 GO:0003723
Gabi1975g00022 779 SMART rrm1_1 281 360 IPR000504 GO:0003723
Gabi1975g00022 779 Gene3D - 366 488 IPR012677 -
Gabi1975g00022 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 364 IPR000504 GO:0003723
Gabi1975g00022 779 SUPERFAMILY RNA-binding domain, RBD 198 277 IPR035979 GO:0003676
Gabi1975g00022 779 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 123 280 - -
Gabi1975g00022 779 Gene3D - 281 363 IPR012677 -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 443 679 - -
Gabi1975g00022 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 697 716 - -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 1 42 - -
Gabi1975g00022 779 FunFam Heterogeneous nuclear ribonucleoprotein Q 281 363 - -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 165 188 - -
Gabi1975g00022 779 CDD RRM_SF 202 273 - -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 738 779 - -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 551 565 - -
Gabi1975g00022 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 377 459 IPR000504 GO:0003723
Gabi1975g00022 779 SUPERFAMILY RNA-binding domain, RBD 281 436 IPR035979 GO:0003676
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 54 188 - -
Gabi1975g00022 779 FunFam RNA recognition water-stress protein1 367 499 - -
Gabi1975g00022 779 CDD RRM_SF 379 434 - -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 446 477 - -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 93 164 - -
Gabi1975g00022 779 Gene3D - 159 280 IPR012677 -
Gabi1975g00022 779 MobiDBLite consensus disorder prediction 748 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1975g00022 Gabi-Chr1975 194956 200528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1975g00022 202 458 Eukaryotic Initiation Factors Gene Family AT2G23350 21.233 1.45e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1975g00022 - - gmx:100811387 989.178