Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1975g00004 ATGGTACCCATGTTTGAAAAGGGAAAGTCCACCAGGATTCTCTTCATAATTCTTTGTGTCCTTCTAACACTGTTGTCACCCCAAGTTGCTTGTTTTTCCAAATTTGCTTCTTCAGCCTCTTTTACCACCACTATTACTGTTCATGATCAAGCTACAGCTGAAGACAGTGAATCAAATGCTCTGTTGAAGTGGAAAGACAGCCTTGACAATCACAGTCTCTTGTCAACTTGGACAGGTAATACTACTCCATGCAAATGGGAAGGAATTCAGTGTGACAAATCCAAGTCAGTCTCCAGCATAAATCTTGCAAATTATAGTCTAAAAGGTACACTCCAAACTCTCAAATTTTCCTCATTGCCCAACCTCCTCAGCCTAAATATCTACAATAACTTCTTTTATGGAACCATTCCCCAACAAATTGGTAACATGTCCAAAGTAAATGTTTTGAACTTTTCTGCAAATTCTTTTGATGGTTCCATCCCTAAAGAAATATGGACATTGAGGAGTTTGCGTAGGCTTGATCTTTCCATGTGCCAACTAAGTGGAGCAATTCCTAATTCCGTAGCAAACTTGTCCAACCTATCATTTCTAGATTTAGGAAACAACAATATTTTTGGCTCCATTCCTCCGGAGATTGGAAAATTGAACAACTTAGAGTATCTAAGTATTTCAAATAATAGCCTTTTTGGTTCCATTCCACGTGAAATCGGAATGTTGACAAACCTTAGGCTTATTCTTTTGTCATTGAACTCTCTCTCTGGTACCATCCCCAAAACAATTGGTAACATGAGCAGTTTAAATGCACTTTACCTTTCTAATAACACTCTTACTGGGCCAATCCCACCCTCCTTATGCAACATGTCTAACTTGACAATTCTCCATCTTTATCACAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGCCAATTTGGAAGAACTTGAACTTGATTACAACCATCTTTCTGGATCCATCCCTTACACCCTTGGAAACTTGACAAAGCTCACCTCATTATACTTGGGCTTTAATGATCTTTCTGGATCAATTCCTCCCTCTATAGGGAATCTGGTCAATTTGGATTTCCTCAGTCTCCAAGAAAACAATCTCTCTGGATCTATTCCTGACACATTTGGAAATTTGATAAGGCTCACTGTCCTGGAATTGGCCTCCAACAAACTTAGTGGTAGCATTCCACAGGTCTTGAATAACTTTACCAACTGGTATTCCTTGTTATTACACAATAATGATTTCATTGGCCACTTGCCACCTCAAATATGCTCTGGTGGGTCATTGACGTACTTCAGTGCTCAACACAACCGTTTAACGGGTCCAATACCAAGAAGCTTGAAGAACTGCTCCAGTATTCAAAGACTCATGCTTTGGGGAAACCAACTAGAAGGAGATATAGAGCAAGATTTTGGGTTATATCCGATATTGGAACATATTGATCTGAGTGACAATAAATTTTATGGCCACATTTCACCAAACTGGGGGAAGTGCCCTAATCTTAATACCTTCAAGATATCCAACAACAATATTTCTGGTGGTATACCTGTACAACTTGTTGAGGCAACCAACCTTGGCAGGCTTCACCTTTCATCCAATCACTTGATGGGAGATATTCCAAAGGAACTTGGGAGTTTGAAAAACTTAGAGGAACTCATCATCAGCAACAATCATTTTTCAGGAAACATTCCCACGGAATTAGGATTGCTGCAGAATCTTCTACAGTTGGAACTAGCAGGAAACGAGTTGAGTGGCACAATACCAGACCAAATTGTGGGGTTACCCAATTTACTGGAATTGAATTTGAGCAACAATCAATTAAAGGGAAGCATTCCCTTTGAGTTTAACAGATTACAACCTCTTGAGTCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAACCGTTCTTGGACAATTGATCCGCTTGCAATGGTTGAATCTCTCACACAATAATCTTTCTGGCACCATTCCTTCAAGTTTTGACCAAATGTCAAGCTTGATTTCTGTCAACATATCATACAACCAGTTAGAAGGACCGCTTCCAAAAAACCAAGCCTTTCTTAAGGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGCTAACATAAAAGGCTTGGTTCTTTGTCCAACCAACAACAGTCGAAAGAGCAACAAAGTGATCCTAATAGTATTCCCTATTTTGGGAACTCTAGTGTTCTGTGTGGTGGGGCTTTTATTGTATATTCTGTGTCGCAGTAAGAGAAAGGAAGAAAGCCAGTCCAAAGAAGCACAAAGGGAAGTAGTCTTTTCCATCTGGAGTTATGATGGGAAAATCGTGTTCGAAAATATCATTGAAGCTACAGAGAATTTTCATGACAAATATCTAATTGGAGTGGGAAGTCAAGGATATGTTTACAAGGCTGTGTTGCCCACAGGCCTTGTTGTTGCTGTGAAAAAATTCCATTCAGTAACAGATGAGGATATGTCAGATAACAGTTCAAAGGCTTTTACTAGTGAGATTCAAGCTTTGACAGAAATAAGGCATCGTAATATTGTAAAGCTGTATGGATTTTGCTCACATTCACGGTTCTCATTTTCGGTTTATGATTTCTTGGAAAGGGGTAGCTTGGATCAGATACTAAACAATGACACACAAGCAAATGCATTTGATTGGGAAAAGAGGGTAAATGTTGTTAAAGGTGTGGCCACTGCTTTATCCTATATGCATCATGACTGTTCACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTCCTAGATCCTGAATATGAAGCCCATGTCGCTGACTTTGGTACAGCTAAGTTTCTAAAGCCTGGTTCACGTAGTTGGACCACATTTGCAGGCACCTTTGGTTATGCTGCTCCAGAGCTTGCACAGACAATGGAAGTGAATGAAAAATGTGATGTTTTCAGTTTTGGAGTACTTGCCTTGGAAATCATTATGGGAAAGCATCCGGGAGATCTCATTTCTTTATTTATGTCACCATCTACAGCACCAATGGCTAATGATTTGTTATTGATTGATATTATAGATCAAAGACCTCCTGAACCTACAAAACCAATTGATGGTGAGATGGTGTTGATTGCAAGGTTGGCATTTGCTTGCTTGAGTGAAAGTCCTAGTTCTCGACCAACCATGGATCAAGTATCTAAGATGCTTGTAATAGGAAAATCACCTTTATCTGACCAGTTTCCCATGATTAGACTAGGACAACTTTGCTAA 3258 0.3935 MVPMFEKGKSTRILFIILCVLLTLLSPQVACFSKFASSASFTTTITVHDQATAEDSESNALLKWKDSLDNHSLLSTWTGNTTPCKWEGIQCDKSKSVSSINLANYSLKGTLQTLKFSSLPNLLSLNIYNNFFYGTIPQQIGNMSKVNVLNFSANSFDGSIPKEIWTLRSLRRLDLSMCQLSGAIPNSVANLSNLSFLDLGNNNIFGSIPPEIGKLNNLEYLSISNNSLFGSIPREIGMLTNLRLILLSLNSLSGTIPKTIGNMSSLNALYLSNNTLTGPIPPSLCNMSNLTILHLYHNNLSGSIPASIENLANLEELELDYNHLSGSIPYTLGNLTKLTSLYLGFNDLSGSIPPSIGNLVNLDFLSLQENNLSGSIPDTFGNLIRLTVLELASNKLSGSIPQVLNNFTNWYSLLLHNNDFIGHLPPQICSGGSLTYFSAQHNRLTGPIPRSLKNCSSIQRLMLWGNQLEGDIEQDFGLYPILEHIDLSDNKFYGHISPNWGKCPNLNTFKISNNNISGGIPVQLVEATNLGRLHLSSNHLMGDIPKELGSLKNLEELIISNNHFSGNIPTELGLLQNLLQLELAGNELSGTIPDQIVGLPNLLELNLSNNQLKGSIPFEFNRLQPLESLDLSGNLLSGTIPTVLGQLIRLQWLNLSHNNLSGTIPSSFDQMSSLISVNISYNQLEGPLPKNQAFLKAPIESLKNNKGLCANIKGLVLCPTNNSRKSNKVILIVFPILGTLVFCVVGLLLYILCRSKRKEESQSKEAQREVVFSIWSYDGKIVFENIIEATENFHDKYLIGVGSQGYVYKAVLPTGLVVAVKKFHSVTDEDMSDNSSKAFTSEIQALTEIRHRNIVKLYGFCSHSRFSFSVYDFLERGSLDQILNNDTQANAFDWEKRVNVVKGVATALSYMHHDCSPPIVHRDISSKNVLLDPEYEAHVADFGTAKFLKPGSRSWTTFAGTFGYAAPELAQTMEVNEKCDVFSFGVLALEIIMGKHPGDLISLFMSPSTAPMANDLLLIDIIDQRPPEPTKPIDGEMVLIARLAFACLSESPSSRPTMDQVSKMLVIGKSPLSDQFPMIRLGQLC 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1975g00004 1085 Pfam Leucine rich repeat N-terminal domain 55 92 IPR013210 -
Gabi1975g00004 1085 FunFam MDIS1-interacting receptor like kinase 2 874 1071 - -
Gabi1975g00004 1085 SUPERFAMILY RNI-like 352 690 - -
Gabi1975g00004 1085 ProSiteProfiles Leucine-rich repeat profile. 649 671 IPR001611 GO:0005515
Gabi1975g00004 1085 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 407 722 - -
Gabi1975g00004 1085 ProSiteProfiles Protein kinase domain profile. 793 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1975g00004 1085 FunFam MDIS1-interacting receptor like kinase 2 isoform A 304 404 - -
Gabi1975g00004 1085 SMART LRR_typ_2 287 310 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 167 190 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 311 334 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 191 215 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 239 263 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 359 382 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 599 622 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 119 143 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 335 358 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 623 646 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 383 406 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 551 575 IPR003591 -
Gabi1975g00004 1085 SMART LRR_typ_2 647 670 IPR003591 -
Gabi1975g00004 1085 Gene3D Transferase(Phosphotransferase) domain 1 874 1071 - -
Gabi1975g00004 1085 SUPERFAMILY RNI-like 99 420 - -
Gabi1975g00004 1085 Gene3D Ribonuclease Inhibitor 53 201 IPR032675 -
Gabi1975g00004 1085 Gene3D Phosphorylase Kinase; domain 1 753 873 - -
Gabi1975g00004 1085 SUPERFAMILY Protein kinase-like (PK-like) 776 1066 IPR011009 -
Gabi1975g00004 1085 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515
Gabi1975g00004 1085 Pfam Leucine Rich Repeat 217 236 IPR001611 GO:0005515
Gabi1975g00004 1085 Gene3D Ribonuclease Inhibitor 407 718 IPR032675 -
Gabi1975g00004 1085 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Gabi1975g00004 1085 Pfam Leucine rich repeat 626 684 IPR001611 GO:0005515
Gabi1975g00004 1085 Pfam Leucine rich repeat 288 348 IPR001611 GO:0005515
Gabi1975g00004 1085 PANTHER LEUCINE RICH REPEAT KINASE 2 356 1069 - -
Gabi1975g00004 1085 FunFam Nuclear pore complex protein NUP107 54 209 - -
Gabi1975g00004 1085 Pfam Protein kinase domain 793 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1975g00004 1085 FunFam Leucine-rich repeat receptor protein kinase MSP1 756 873 - -
Gabi1975g00004 1085 ProSitePatterns Tyrosine protein kinases specific active-site signature. 919 931 IPR008266 GO:0004672|GO:0006468
Gabi1975g00004 1085 Gene3D Ribonuclease Inhibitor 304 406 IPR032675 -
Gabi1975g00004 1085 SMART LRR_sd22_2 575 601 - -
Gabi1975g00004 1085 SMART LRR_sd22_2 383 409 - -
Gabi1975g00004 1085 SMART LRR_sd22_2 287 313 - -
Gabi1975g00004 1085 SMART LRR_sd22_2 623 657 - -
Gabi1975g00004 1085 SMART LRR_sd22_2 335 361 - -
Gabi1975g00004 1085 SMART LRR_sd22_2 191 220 - -
Gabi1975g00004 1085 Gene3D Ribonuclease Inhibitor 202 303 IPR032675 -
Gabi1975g00004 1085 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 210 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1975g00004 Gabi-Chr1975 76302 80177 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1975g00004 6 967 Receptor kinase-like Gene Family AT4G08850 43.763 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1975g00004 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1975g00004 - - gmx:100814634 1428.31