Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1975g00002 ATGGTACCCATGTTTGAAAGGAGAATGTCCACCAAGATTCTCTTCATAATCCTTTGTGTCCTTCTAACACTCTGGTTACCCCAAGTTGCTGGTTTTTCCAAAATTGCTTCTTTAGCCACCAAAGCTAATGTTTATGCTGAAGACAGGGAAGCAAATGCTCTGTTGAAGTGGAAAGACAGCCTTGACAACCACAGCCAAACACACTTGTCAACTTGGGCAGCTACTACTACTCCATGCAAATGGGAGGGAATTCAGTGTGACAAATCCAAGTCAGTCTCCAGCATAAATCTTGCAAATTATGGACTGAAAGGTACACTCCAAACTCTCAGCTTCTCCTCATTGCCAAACCTCCTCAGCCTTAATATCTGCAACAACTCCTTTTATGGAACCATTCCCCCACAAATTGCTAACTTGTCTAAAGTAAATGTTTTGAACTTTTCTACAAATTCTTTCCATGGTTCCATCCCTAAAGAAATATGGACATTGAGGAGTTTGCGTAGGCTTGATCTTTCCGTATGCCAACTAAGTGGACCAATTCCTAATTCCATTGCAAACTTGTCCAACCTATTATTTCTAGATTTAGGAAGCAACAATATTTCTGGCTCCATTCCTCCGGAGATTGGAAAATTAAACAACTTGGAGTTTCTAGGTATTGCATATAGTAACCTTTTCGGTTCCATTCCCCAAGAAATTGGATTGTTGACAAAGCTTCGGTATATTGATTTGTCAACGAACTCTTTCTCTGGTACCATCCCCAAAACAATTGGTAACATGAGCAGTTTAAATAGACTTTTCCTTGCTAACAACACTATGTTGTCCGGGCCAATCCCATCCTCCTTATGGAACATGTCTAATTTGACCATTCTACAACTTTATAACAATAGTCTTTCTGGATCAATCCCTGATTCCATAGAAAATTTGGCCAATTTGGAAGACCTTGAACTTTCAGACAACCACCTCTCTGGATCCATTCCTTACACAGTTGGAAACTTGACAAAGCTCAGTGCATTATACTTGGGCTTTAATAATTTTTCTGGATCAATTCCTCCCTCTATAGGGAATCTGATCAATTTGGAAATCCTCAGTCTCCAAGGAAACAATCTCTCTGGATCTATTCCTTCAACAATTGGAAATTTGGTAAGGCTCACCATCCTAGAATTGTCCTTCAACAAACTTAGTGGTAGCATTCCAGAGGTCATGAATAACATTACTAACTGGTATTCCTTGTTAATATCTGATAATGATTTCACTGGCCACTTGCCACCTCAAATTTGCTCTGGAGGGTCATTGGCGTTCTTCAGTGCTCAATTCAATCGCTTAACGGGTCCAGTACCAAGAAGCTTGAAGAAATGCTCCAGTATTCGAAGACTCGGGCTTGATGGAAACCAACTGGAAGGAGATATAGAGCAAGATTTTGGTGTATATCCGAATTTGGAATATATTGATCTGAGTGACAATAAATTTTATGGCCACATTTCGCCAAACTGGGGGAAGTGCCCTAATCTTAATACCTTCAAGATATCCAACAACAATATTTCTGGTGGTATACCTGTACAACTTGTTGAGGCAACCAACCTTGGCAGTCTTCACCTTTCTTCCAATCACTTGGTGGGAGAGATTCCAAAGGAACTTGGAAATTTGAAAAAATTAGTTGAACTCAACATCAGCAACAATCATTTTTCAGGAAGCATTCCCACAGAAGTAGGATCACTGCAGAATCTTCAACAGTTAGATCTAGCAGGAAACGAGTTGAGTGGCACAATACCAAAGGAAGTTGCAAGTTTTCGCAAATTAATGGGACTGAATTTGAGCAACAACAAAATAGACGGAAGCATTCCTGTTGAGTTTGGCAAATCACAGTCTCTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAATAATACCACCCGTGCTTGGACAGTTGATCCTCTTGAAATGGTTGAATCTCTCACACAATAATCTTTCAGGCACCATTCCTCCAAGTTTTGACCAAATGTCAAGCTTGATTTCTGTCAACATATCATACAACCTGTTAGATGGGCCGCTTCCAAAAAATCAAGCCTTTCTTAATGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTATGTGGTAACATAACAGGCTTGGTTCTTTGTCCAACCAACCACAAACGAAAGAACAACAAAGTCATCCTTATAGTATTCCCAATTTTGGGAACTCTAGTGTTCTGTGTAATGGGGCTTTTATTGTATATTCTCTGTCGAAGTAAGAGAAAGGAAGAAAGCCAGTCCAAAGAAGCACAAAGGGAAGTAGTCTTTTCCATATGGAGTTATGATGGGAAAATGATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTCATGACAAATATCTAATTGGAGTGGGAGGTCAAGGATATGTTTACAAGGCTGTGTTGCCCGCAGGCCTTGTTGTTGCTGTAAAGAAACTCCATTCAGTAATAGATGAGGATATGTCTGATTACAGTTCAAAGGCTTTTACTAGTGAGATTCAAACCTTGACAGAAATCAAACACAGGAACATTGTAAAACTTCATGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTTTATAAGTTCTTGGAAGGTGGTAGCTTGGATCAGATACTGAACAATGACACACAAGCAATTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTATCTACATCATGACTGCACACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTCCTAGATCCTCAATATGAAGCTCACGTCTCTGACTTTGGTACTGCTAAGTTTCTAAAGCCTGATTCACATAATTGGACCACATTTGCAGGCACCTTTGGTTATGCTGCTCCAGAGGTTGCTCAGACAATGGAAGTGAATGAGAAATGTGATGTTTTCAGTTTTGGAGTACTTGCTTTGGAAATCATAATGGGAAAGCATCCGGGAGATCTCATCTCTTTATTTTTGTCACCATCTACAACACCAATGGCTAATGATATGTTATTGATTGATGTTATAGATCAAAGAACTACTGAACCTACGAAACCAATTGATGGTGAGGTGGTGTTGATTGCAAGGTTGGCATTTGCTTGCTTGAGTGAAACCCCAAGTTCTCGACCAACCATGGAGCAAGTATCTAAGGCGCTTGTAATTGGAAAATCACCTTTAGATGACCAGTTTCCCATTATCAGACTAGGACTACTTCACTGA 3246 0.3965 MVPMFERRMSTKILFIILCVLLTLWLPQVAGFSKIASLATKANVYAEDREANALLKWKDSLDNHSQTHLSTWAATTTPCKWEGIQCDKSKSVSSINLANYGLKGTLQTLSFSSLPNLLSLNICNNSFYGTIPPQIANLSKVNVLNFSTNSFHGSIPKEIWTLRSLRRLDLSVCQLSGPIPNSIANLSNLLFLDLGSNNISGSIPPEIGKLNNLEFLGIAYSNLFGSIPQEIGLLTKLRYIDLSTNSFSGTIPKTIGNMSSLNRLFLANNTMLSGPIPSSLWNMSNLTILQLYNNSLSGSIPDSIENLANLEDLELSDNHLSGSIPYTVGNLTKLSALYLGFNNFSGSIPPSIGNLINLEILSLQGNNLSGSIPSTIGNLVRLTILELSFNKLSGSIPEVMNNITNWYSLLISDNDFTGHLPPQICSGGSLAFFSAQFNRLTGPVPRSLKKCSSIRRLGLDGNQLEGDIEQDFGVYPNLEYIDLSDNKFYGHISPNWGKCPNLNTFKISNNNISGGIPVQLVEATNLGSLHLSSNHLVGEIPKELGNLKKLVELNISNNHFSGSIPTEVGSLQNLQQLDLAGNELSGTIPKEVASFRKLMGLNLSNNKIDGSIPVEFGKSQSLESLDLSGNLLSGIIPPVLGQLILLKWLNLSHNNLSGTIPPSFDQMSSLISVNISYNLLDGPLPKNQAFLNAPIESLKNNKGLCGNITGLVLCPTNHKRKNNKVILIVFPILGTLVFCVMGLLLYILCRSKRKEESQSKEAQREVVFSIWSYDGKMMFENIIEATENFHDKYLIGVGGQGYVYKAVLPAGLVVAVKKLHSVIDEDMSDYSSKAFTSEIQTLTEIKHRNIVKLHGFCSHSRFSFLVYKFLEGGSLDQILNNDTQAIAFDWEKRVNVVKGVANALSYLHHDCTPPIVHRDISSKNVLLDPQYEAHVSDFGTAKFLKPDSHNWTTFAGTFGYAAPEVAQTMEVNEKCDVFSFGVLALEIIMGKHPGDLISLFLSPSTTPMANDMLLIDVIDQRTTEPTKPIDGEVVLIARLAFACLSETPSSRPTMEQVSKALVIGKSPLDDQFPIIRLGLLH 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1975g00002 1081 SMART LRR_sd22_2 234 260 - -
Gabi1975g00002 1081 SMART LRR_sd22_2 619 653 - -
Gabi1975g00002 1081 SMART LRR_sd22_2 186 215 - -
Gabi1975g00002 1081 SMART LRR_sd22_2 331 357 - -
Gabi1975g00002 1081 SMART LRR_sd22_2 379 405 - -
Gabi1975g00002 1081 SMART LRR_sd22_2 283 309 - -
Gabi1975g00002 1081 SMART LRR_sd22_2 571 603 - -
Gabi1975g00002 1081 Pfam Protein kinase domain 789 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1975g00002 1081 Gene3D Transferase(Phosphotransferase) domain 1 870 1067 - -
Gabi1975g00002 1081 Pfam Leucine rich repeat 284 344 IPR001611 GO:0005515
Gabi1975g00002 1081 Pfam Leucine rich repeat 621 680 IPR001611 GO:0005515
Gabi1975g00002 1081 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Gabi1975g00002 1081 Pfam Leucine rich repeat 476 536 IPR001611 GO:0005515
Gabi1975g00002 1081 SUPERFAMILY Protein kinase-like (PK-like) 772 1061 IPR011009 -
Gabi1975g00002 1081 Pfam Leucine rich repeat N-terminal domain 48 87 IPR013210 -
Gabi1975g00002 1081 Gene3D Phosphorylase Kinase; domain 1 749 869 - -
Gabi1975g00002 1081 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Gabi1975g00002 1081 SUPERFAMILY RNI-like 348 686 - -
Gabi1975g00002 1081 Gene3D Ribonuclease Inhibitor 301 401 IPR032675 -
Gabi1975g00002 1081 SMART LRR_typ_2 114 138 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 355 379 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 524 547 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 331 354 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 186 210 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 571 595 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 283 306 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 234 258 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 307 330 IPR003591 -
Gabi1975g00002 1081 SMART LRR_typ_2 643 666 IPR003591 -
Gabi1975g00002 1081 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 330 399 - -
Gabi1975g00002 1081 SUPERFAMILY RNI-like 94 402 - -
Gabi1975g00002 1081 Gene3D Ribonuclease Inhibitor 402 490 IPR032675 -
Gabi1975g00002 1081 Gene3D Ribonuclease Inhibitor 201 300 IPR032675 -
Gabi1975g00002 1081 Gene3D Ribonuclease Inhibitor 48 200 IPR032675 -
Gabi1975g00002 1081 ProSitePatterns Tyrosine protein kinases specific active-site signature. 915 927 IPR008266 GO:0004672|GO:0006468
Gabi1975g00002 1081 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 403 718 - -
Gabi1975g00002 1081 PANTHER LEUCINE RICH REPEAT KINASE 2 352 1063 - -
Gabi1975g00002 1081 FunFam MDIS1-interacting receptor like kinase 2 870 1067 - -
Gabi1975g00002 1081 FunFam MDIS1-interacting receptor like kinase 2 isoform A 47 203 - -
Gabi1975g00002 1081 ProSiteProfiles Protein kinase domain profile. 789 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1975g00002 1081 FunFam Leucine-rich repeat receptor protein kinase MSP1 752 869 - -
Gabi1975g00002 1081 Gene3D Ribonuclease Inhibitor 491 588 IPR032675 -
Gabi1975g00002 1081 Gene3D Ribonuclease Inhibitor 589 712 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1975g00002 Gabi-Chr1975 45120 48568 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1975g00002 5 963 Receptor kinase-like Gene Family AT4G08850 43.782 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1975g00002 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1975g00002 - - gmx:100815688 1486.47