Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1973g00003 ATGCCTGCAACTCTTCATCAATTTTTATATCAGCCTTTGACAGCTGACTCACAATACCTTGGAACAGGTGCAGGATTCATAGTTCTAATTGTGGGAATTTCCACGCTGTACTTAATATACGAGAAAAGGAAACTCATCAAACTGAAGGAGAAGTTCTTTAAGCAAAATGGCGGTATCATTTTGCAACAGCGACTCTCTGCAGGAGAAAACACTTCCCAAAGTGCTCAAATTTTCACAGCAGATCAACTAAAGAAGGCCACCAACAACTATGACGAGAGCTTAATCATTGGCAGAGGAGGTTATGGTACAGTTTTCAAAGGATTTCTAGCAGATAACAGAACTGTTGCTGTCAAGAAGTCCAAAATAGTCGGTGAGAGCCAAATAGAACAATTCATTAACGAGGTGGTTATTCTATCACAAATCATTCATAGGAATGTGGTTAAACTCTTGGGTTGTTGTTTGGAGATAGAAGTTCCTTTACTTGTTTATGAATTTGTTACCAATGGTACCCTTTTTGATTTTATACGCACTGAAAGAAAGGTCAATAACGCAACATGGAAAACAAGGCTAAGGATAGCAGCAGAGGCTGCAGGGGCTCTATCATATCTGCATTCAGCTGCTTATATACCCATTATCCACAGAGATGTGAAGATTGCTAACATTCTCTTGGATGACACTTATACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCTCTTGATCAAACTGAATTGGCCACAATGATGCAAGGAACTTTTGGTTATTTGGACCCTGAGTACATGCAAACAAGCCAACTTACTGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTGCTTGTAGAGCTGCTTACAGGGGAGAAACCTCTTTGTTTTAAGAGGCCAGAAGAGGAAAGAAGTCTCGCTATGCACTTTCTGTCTTGCTTGAAAGAGGATCGCATGTTTAAAGTCTTTCAAGTTGGAATTTTGAATGAAGAAAATAAGGAGGAGATCAAGGAGGTTGCTATTCTTGCAACAAAATGCTTGAGACTTATAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCTATGGAATTGGAGGGAATAAGGCTAATGGAGAAGCACTCATGGACCAATGCAGAGGTAAATCTAGAGGAGACTCATTACCTGCTTCATGAGGCATGA 1167 0.4045 MPATLHQFLYQPLTADSQYLGTGAGFIVLIVGISTLYLIYEKRKLIKLKEKFFKQNGGIILQQRLSAGENTSQSAQIFTADQLKKATNNYDESLIIGRGGYGTVFKGFLADNRTVAVKKSKIVGESQIEQFINEVVILSQIIHRNVVKLLGCCLEIEVPLLVYEFVTNGTLFDFIRTERKVNNATWKTRLRIAAEAAGALSYLHSAAYIPIIHRDVKIANILLDDTYTAKVSDFGASRLVPLDQTELATMMQGTFGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPLCFKRPEEERSLAMHFLSCLKEDRMFKVFQVGILNEENKEEIKEVAILATKCLRLIGEERPSMKEVAMELEGIRLMEKHSWTNAEVNLEETHYLLHEA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1973g00003 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Gabi1973g00003 388 SUPERFAMILY Protein kinase-like (PK-like) 71 361 IPR011009 -
Gabi1973g00003 388 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 367 IPR045274 GO:0007166
Gabi1973g00003 388 SMART serkin_6 90 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1973g00003 388 FunFam Wall-associated receptor kinase 2 166 383 - -
Gabi1973g00003 388 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Gabi1973g00003 388 Pfam Protein kinase domain 92 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1973g00003 388 ProSiteProfiles Protein kinase domain profile. 90 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1973g00003 388 Gene3D Transferase(Phosphotransferase) domain 1 166 383 - -
Gabi1973g00003 388 FunFam Wall-associated receptor kinase 2 60 165 - -
Gabi1973g00003 388 Gene3D Phosphorylase Kinase; domain 1 57 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1973g00003 Gabi-Chr1973 15921 18235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1973g00003 20 373 Receptor kinase-like Gene Family AT1G21230 57.183 1.59e-143 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi1973g00003 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1973g00003 - - gsj:114381577 579.326