Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1973g00002 ATGGAACTGAAGCAGAAGCACACGAAACTGGGCAAGGTGTTAATGGTTGCATTAGCCCTTCTAGTGTCATCATCAGTTGCAGCTGATCAAGCCCTTCCTCCACCACCAAATCAAACCCTTCCTGGCTGCAATGACACTTGTGGAGATGTCAAAATTCCATATCCATTCGGCACAGGCATGTCATCTACACCAGATCATAAGCCATGTTTCTTGGATGGTCGATTTAATCTTACTTGCAATAACTCCACATTATATTTGAGTAATTTTCCAGTTTTAAATATAAGCGTCCAAGGTCAAATGGAGGTATTGGTCTATGTTTCATCAATTTGCTATAGCCAAGATGGAAATTCCAATTGGAACCATCCCACGCAAAAATTTGCTAAGTTCAGCATTTCAAAGGAGGAAAACAAGTTCCATACTGTTGGATGCAATAGTTATGGATTTCTCAACAGCTTTTACAACGGCGAGGAATATTCAACTGGGTGCTCATCAAAATGTTATGGCAATAAAAGGGAAATCCATAATGGAACGTGTTACGGCATAGGGTGCTGCCAGGTGGATATTCCTCCTTCAATGAGGAATATCAGCATTGAAGCAAAGAGCTTCTCCGATTCAACGAAATATTGGGGAAACTGCAGCTATTCCTTTGTTGTCAAAGATGGCTACTATACTTTTGACACCAGTCATTTATATGCTTTCCCTTACGAGATGCTCCCCATGGTTGTTGATTGGACCGTAGGAAACCAAGGTTGTGACGCTTCCAAAAGTGGAGTCGACTATGCATGCATGAACAATACCTATTGCTACGACAAGGACACTGATCTTGGTTACCGATGCATATGTAATGAAGGTTATGAAGGAAATCCATACCATTCGGATGGTTGCAGAGATATTGATGAATGTAAGACATCAAAGAATACATGCCTAAGTGAAAATAATTGTCACAACACCGATGGGTCTTTCAAATGTTTCTGTCCTAAGGGGCAATCCGGAGATGGAACAAAGGACGGAGGGTGCCACCGACGAGATATAGTTACCAAGGTTGTCATTGGTGCAGGATTCATAGTTCTAATTGTGGGAATTTCCTCGCTGTACTTAATATACGAGAAAAGGAAACTCATCAAACTGAAGGAGAAGTTCTTTAAGCAAAATGGGGGTATCATTTTGCAACAGCGACTCTCTGCAGGAGAAAACACTTCTCAATCTACTACAGTGTTCTCAGCAGAGCAACTTAAAAAGGCCACCAACAATTATGATGAGAGCTTAATCATCGGCAGAGGAGGTTATGGTATAGTTTACAAAGGAGTTTTGTCAGATAAGAGGATTGTTGCCATCAAGAAGTCCAAAATTGTGGATCAGAGCCAAATCGAGCAATTCATTAACGAGGTGATTGTGCTATCACAAATTAATCATAGGAATGTGGTCAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCACTGGTTTATGAATTTGTTAACAATGGTACACTTTTTGATTATATACACAATGAAGGCAAGGCAGGTAATGTATCTTGGAAAACAAGGCTAAGGATAGCAGCAGAGGCTGCAGGGGCTCTATCATATCTGCACTCAGCTGCTTCTATACCAATTATACATAGAGATGTAAAGACTGCTAACATTCTCTTGGATGACACTTATACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACATTGGTGCAAGGAACTCTTGGTTATTTGGACCCAGAGTACATGCAAACAAGCCAACTTACTCAGAAAAGTGATGTGTATAGCTTCGGAGTAGTGCTTGTAGAGCTGCTTACAGGGGAGAAACCTCTTTGTTTTAAGAGGCCAGAAGAGGAAAGAAGTCTTGCTATGCACTTTCTGTCTTGCTTGAAAGAGGATCGCATGTTTGAAGTCTTTCAAGTTGGAATTTTGAATGAAGAAAATAAGGAGGAGATCAAGGAGGTTGCTATTCTTGCAACAAAATGCTTGAGACTTATAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCTATGGAATTGGAGGGACTAAGGCTAATGGAGAAGCACTCATGGACCAATGAGGAGGTAAATCTAGAGGAGACTCATTACCTGCTTCATGAGGCATCATCTAGCATTCATGAACATGGTGATAACAGCCATCATCAAAATACTGGGTATGACAGCATCAGGGATCATGAACTAATTGCTTTCGATGATGGAAGATGA 2250 0.4107 MELKQKHTKLGKVLMVALALLVSSSVAADQALPPPPNQTLPGCNDTCGDVKIPYPFGTGMSSTPDHKPCFLDGRFNLTCNNSTLYLSNFPVLNISVQGQMEVLVYVSSICYSQDGNSNWNHPTQKFAKFSISKEENKFHTVGCNSYGFLNSFYNGEEYSTGCSSKCYGNKREIHNGTCYGIGCCQVDIPPSMRNISIEAKSFSDSTKYWGNCSYSFVVKDGYYTFDTSHLYAFPYEMLPMVVDWTVGNQGCDASKSGVDYACMNNTYCYDKDTDLGYRCICNEGYEGNPYHSDGCRDIDECKTSKNTCLSENNCHNTDGSFKCFCPKGQSGDGTKDGGCHRRDIVTKVVIGAGFIVLIVGISSLYLIYEKRKLIKLKEKFFKQNGGIILQQRLSAGENTSQSTTVFSAEQLKKATNNYDESLIIGRGGYGIVYKGVLSDKRIVAIKKSKIVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHNEGKAGNVSWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTELATLVQGTLGYLDPEYMQTSQLTQKSDVYSFGVVLVELLTGEKPLCFKRPEEERSLAMHFLSCLKEDRMFEVFQVGILNEENKEEIKEVAILATKCLRLIGEERPSMKEVAMELEGLRLMEKHSWTNEEVNLEETHYLLHEASSSIHEHGDNSHHQNTGYDSIRDHELIAFDDGR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1973g00002 749 Pfam Wall-associated receptor kinase galacturonan-binding 43 99 IPR025287 GO:0030247
Gabi1973g00002 749 ProSiteProfiles EGF-like domain profile. 297 335 IPR000742 -
Gabi1973g00002 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 701 IPR045274 GO:0007166
Gabi1973g00002 749 Pfam Calcium-binding EGF domain 297 333 IPR001881 GO:0005509
Gabi1973g00002 749 SMART egf_5 300 340 IPR000742 -
Gabi1973g00002 749 SMART egf_5 250 296 IPR000742 -
Gabi1973g00002 749 SMART egfca_6 297 340 IPR001881 GO:0005509
Gabi1973g00002 749 Pfam Wall-associated kinase 176 282 IPR013695 GO:0004674|GO:0016020
Gabi1973g00002 749 Gene3D Laminin 249 339 - -
Gabi1973g00002 749 SUPERFAMILY Protein kinase-like (PK-like) 399 688 IPR011009 -
Gabi1973g00002 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 314 325 IPR000152 -
Gabi1973g00002 749 FunFam Fibrillin 2 292 336 - -
Gabi1973g00002 749 Gene3D Transferase(Phosphotransferase) domain 1 494 714 - -
Gabi1973g00002 749 ProSiteProfiles Protein kinase domain profile. 418 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1973g00002 749 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Gabi1973g00002 749 Gene3D Phosphorylase Kinase; domain 1 385 493 - -
Gabi1973g00002 749 FunFam Wall-associated receptor kinase 2 388 493 - -
Gabi1973g00002 749 CDD EGF_CA 297 332 - -
Gabi1973g00002 749 SMART serkin_6 418 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1973g00002 749 SUPERFAMILY EGF/Laminin 297 332 - -
Gabi1973g00002 749 Pfam Protein kinase domain 420 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1973g00002 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Gabi1973g00002 749 FunFam Wall-associated receptor kinase 2 494 711 - -
Gabi1973g00002 749 ProSitePatterns Calcium-binding EGF-like domain signature. 297 323 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1973g00002 Gabi-Chr1973 6936 9918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1973g00002 43 749 Receptor kinase-like Gene Family AT1G21230 46.291 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi1973g00002 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1973g00002 - - gmx:106795446 1014.22