Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1972g00034 ATGAGTTCAAAATATGATTTTCTGAAGGATGTTAATCCTGCCAAGGAGGACTGGAGGATTAAGGTGAAGGTGGTTCGGACTTGGAAAGTTCCTAACTTTCAGCGTAAAAATTTGGAGGACAATCTTGAAATGGGTGGTAGGATCCACGCCATTGTCAAAGACGTCATTGGTTTAATCTCAGGAATTGGGAAAGTTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTGGTGTTGGAGCTTGACGACCTGAGGGGTCATAAGTTGGAGTGCACTTTGTGGGAGCATTATGTGGATGAGGTCCAATCTTTTTTGGCAGACAACGACGATCCTCATAACGTCCTGATAGTCCAACTGGGAAGGATTAAGTGTTTTAGAGGTAAGGTCGGGATAACAAATACAAAATATACAACAAGGATTGTAATGGATTCAAAACTGAATGAGATTGTTGAGTTCAAAAAACGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGGATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGACGTAACTACCTGCATCACATACGGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGGATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTTTGTTTGATCGCGACTGTGTGTCTTTGTTGGGAATGAGTGCTGCTGAATTGTGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAAAACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCAATAAGGCTTTTATAGATCCAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCATCGAAACTGGAAAAGGCTGCGATGAGCTATGAATTCGATTTAGATTCATGTTATTAA 1167 0.3865 MSSKYDFLKDVNPAKEDWRIKVKVVRTWKVPNFQRKNLEDNLEMGGRIHAIVKDVIGLISGIGKVCDRVVSGRKTKMVVLELDDLRGHKLECTLWEHYVDEVQSFLADNDDPHNVLIVQLGRIKCFRGKVGITNTKYTTRIVMDSKLNEIVEFKKRLSIDGVESSTRMTQLSTQSSYSFENDFLKETEKKSISDVKLCVDVTTCITYGTIKAIESKYNWWYKSCKKCPFSVYEDFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVSLLGMSAAELCELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLKTNSEPKYQVSKICISEDIISAFNKAFIDPNDEANFDNARENEVVSSKLEKAAMSYEFDLDSCY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1972g00034 388 Pfam Replication factor-A C terminal domain 206 337 IPR013955 -
Gabi1972g00034 388 PANTHER OS03G0429900 PROTEIN 8 338 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1972g00034 388 CDD RPA1_DBD_C 204 337 IPR047192 -
Gabi1972g00034 388 Gene3D - 169 344 IPR012340 -
Gabi1972g00034 388 CDD RPA1_DBD_B_like 54 157 - -
Gabi1972g00034 388 SUPERFAMILY Nucleic acid-binding proteins 202 337 IPR012340 -
Gabi1972g00034 388 Gene3D - 30 167 IPR012340 -
Gabi1972g00034 388 SUPERFAMILY Nucleic acid-binding proteins 51 162 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1972g00034 Gabi-Chr1972 272198 274721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1972g00034 43 335 Core DNA Replication Machinery Family AT5G08020 24.430 2.19e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1972g00034 - - adu:107490971 213.772