Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1972g00031 ATGTCCTCCCCACCACCTCCAGATCCACCCTCCGCCCTCCCTCTCACTCTCCCAGCTCCTCCTCCCCCCTCCTCCTCCTCCACCCGCCGCCTCCCTCCGCCCTGCTGGTCCCATGACGAGACCGTCGCCGTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCAGCAACCTCAAGTCCAACCACTGGCAAGATGTCGCAGACGCCGTCGCCACCCGCTGCCCCATCGCCTGCCCTCCCAAAACCGCCGTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCAAGCGCTACCGCAATGAGATCCAGCGCGCTCGCTCCCTCCCCCTCTCCCGCTTCAACTCCTCCTGGGTCCACTTCAACCGCATGCACTCCATGGAAAAAGGCCCCTCCCCCCTCAAACCCAACAACAACGATTCCGGCGACGATGACGACGCCGACATCGAAGATCAAGACTTGTACGACGAATTCAAGATCGGTTCTAACACCAGGACCTTGAATAAACTCTATAGGAACGGGATTGAAGATTCTGGTAGCGGTGGGTTCAGGATTAGAATTCCAAGTGGGTTAACCATGGCGCAACCTGGGTCCAAGTTCAATTGGAAGGCTGGTGATCGCAAATTGAACCCTAACCCTAACCCTAAACCTAACCCTAGACCTAACCCTAAACCTAACCCTAGCCATGGTTATGTGAAAGGGAAGAGGGAGAGAGACCCGATGGGTGAGATGGTGTCTGCGATTAAGGCATTCGGAGATGCGTATGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGTTTGAGAGTATGCATATGGAGATGGAAATGAAGCGAACCCAAATGATCCTCGAGTCCCAGCATCGAATTGTGGATTCTTTTGCCAATGCGGTTTCAGATAAGCAGAAGAAGAAGGCTAAGAGAATGCCTTCATCATCCCCACAACATTGA 954 0.5545 MSSPPPPDPPSALPLTLPAPPPPSSSSTRRLPPPCWSHDETVAVIDAYRDKWYSLGRSNLKSNHWQDVADAVATRCPIACPPKTAVQCRHKMEKLRKRYRNEIQRARSLPLSRFNSSWVHFNRMHSMEKGPSPLKPNNNDSGDDDDADIEDQDLYDEFKIGSNTRTLNKLYRNGIEDSGSGGFRIRIPSGLTMAQPGSKFNWKAGDRKLNPNPNPKPNPRPNPKPNPSHGYVKGKRERDPMGEMVSAIKAFGDAYVRMEQMKMEMAREFESMHMEMEMKRTQMILESQHRIVDSFANAVSDKQKKKAKRMPSSSPQH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1972g00031 317 Coils Coil 89 109 - -
Gabi1972g00031 317 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 301 IPR044823 -
Gabi1972g00031 317 MobiDBLite consensus disorder prediction 127 149 - -
Gabi1972g00031 317 MobiDBLite consensus disorder prediction 1 33 - -
Gabi1972g00031 317 MobiDBLite consensus disorder prediction 212 226 - -
Gabi1972g00031 317 MobiDBLite consensus disorder prediction 1 29 - -
Gabi1972g00031 317 MobiDBLite consensus disorder prediction 298 317 - -
Gabi1972g00031 317 Gene3D - 36 101 - -
Gabi1972g00031 317 SMART 118neu2 43 132 IPR006578 -
Gabi1972g00031 317 MobiDBLite consensus disorder prediction 173 240 - -
Gabi1972g00031 317 Pfam Myb/SANT-like DNA-binding domain 34 127 IPR044822 -
Gabi1972g00031 317 FunFam Trihelix transcription factor ASIL2 36 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1972g00031 Gabi-Chr1972 259166 260695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1972g00031 35 127 Trihelix Transcription Factor Family AT3G14180 33.333 1.49e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi1972g00031 Myb_DNA-bind_4 1.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1972g00031 - - qsa:O6P43_017256 380.563