Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1972g00009 ATGAATACCATATTAGACTTGGCAGCTTTAGACATTGAAGAGGGACGGCTACCTGAGTACTCTCCTAGGAGTCTAGAATCTGGAACCCCAAGTTCAAGGGCCAGCACTTCTGATTCAGAGGGTCAACCAGGTTCAACAGACAGTAATAATAATAACCAGTGGCGTGGTTTCTTTAAATTGCTGAAGAAAGGGTCCCAAATGCCCTTCCAAACCTTTCATCCACTTAAAAATGTTCCAAAACTAACTAGAAGAAAGAGCAAAAGAATCAGGGAGGACCTGATTCCATCTCTGAATTCTCCAGCTCTTCAGTCATCTTTTGACACTGAGTTTTGCGGCTTCAAATCCTCCTGGAAAAATTTCACTCTCTCAGAAATCCAGTCTGCAACCAATGACTTTAGCCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGCTAACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCACGTGGACCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGGGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGCAGCTTGTCATCCATACTTTATGGACCTAGAGAGAAACTGAGTTGGAGCATCAGATATAAGATTGCTTTGGGGACTGCTGTGGGCCTTCGCTATCTGCATGTGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCTAATATACTGCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCACGGTATAGTGGATGAAAAGACTGATGTCTACGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGGCGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTGCAAACAACATCAAAGAGCTTGTGGATCCAACTTTGGCTGATGCTTATGATGAAGAGCAGATGAAACTTGTAATCTTAGCAGCTTCTCTGTGTATAGACCAGACTTCAATTCAGCGACCACAAATGAGCCAGGTGTTACAAATACTAAGAGGTGAAGAAGAGAGCTTGGAAATCATAAAAGAACAACAAAAGTCAAAACTTCAGAGGACCTACTCTGTAGAACTCTATGATGCAGAAGAGTACAACTCAACTAAGTATTTGAATGAGATGGATCGACATATGGAGACTATTCTAGGCACCAGTAATTCTATCAAAGAAGATAGCAATGAAAACTAG 1380 0.4203 MNTILDLAALDIEEGRLPEYSPRSLESGTPSSRASTSDSEGQPGSTDSNNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDTEFCGFKSSWKNFTLSEIQSATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLSWSIRYKIALGTAVGLRYLHVGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANNIKELVDPTLADAYDEEQMKLVILAASLCIDQTSIQRPQMSQVLQILRGEEESLEIIKEQQKSKLQRTYSVELYDAEEYNSTKYLNEMDRHMETILGTSNSIKEDSNEN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1972g00009 459 SUPERFAMILY Protein kinase-like (PK-like) 114 397 IPR011009 -
Gabi1972g00009 459 ProSitePatterns Protein kinases ATP-binding region signature. 138 160 IPR017441 GO:0005524
Gabi1972g00009 459 SMART serkin_6 132 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1972g00009 459 PANTHER OS08G0249100 PROTEIN 31 441 IPR046958 -
Gabi1972g00009 459 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 102 206 - -
Gabi1972g00009 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gabi1972g00009 459 MobiDBLite consensus disorder prediction 16 52 - -
Gabi1972g00009 459 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 209 411 - -
Gabi1972g00009 459 Gene3D Phosphorylase Kinase; domain 1 97 206 - -
Gabi1972g00009 459 ProSiteProfiles Protein kinase domain profile. 132 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1972g00009 459 Gene3D Transferase(Phosphotransferase) domain 1 209 425 - -
Gabi1972g00009 459 MobiDBLite consensus disorder prediction 24 52 - -
Gabi1972g00009 459 Pfam Protein tyrosine and serine/threonine kinase 135 396 IPR001245 GO:0004672|GO:0006468
Gabi1972g00009 459 Coils Coil 450 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1972g00009 Gabi-Chr1972 91181 94091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1972g00009 103 422 Receptor kinase-like Gene Family AT1G53420 38.720 1.99e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi1972g00009 PK_Tyr_Ser-Thr 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1972g00009 - - lja:Lj6g3v1915960.1 780.4