Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1972g00001 ATGGAACCCCAATCGCTCGTTCTTCCACACATGGAAACCGAAGTCGAAGACCCTTGGGACCTTACTTCCCTTCTCGACTTCAATCTAGACGATGAAATTCCTATCTCCTTTGACCTTGACAAAAATTCACAACTTCCTCTTCCCGAATCGTTGGACCTTCCCTCTAACTCTAACCTTCAGCTTCACCTTCCGGAGATTCCGACCAATGATAAGGTCCGAAAGCGCGACCCGAGGCTCGCCTGCTCCAACTTTCTCGCGGGTCGGGTTCCATGTGCCTGCCCCGAGATGGACGCCAAGCTCGAAGAAGAGGAGAATAGTTTGCCAGGAAAGAAACGCGCTCGGTCCGCGCGTGCATCTGCATCTGCACGCTGCCAGGTGCCTGGGTGTGAGGCCGATATCACCGAGCTCAAGGGCTATCACCGGAGGCATAAGGTTTGTTTGCGCTGCGCTAATGCCACTACCGTTCTCCTTCACGGGGAATCCAAGAGATACTGTCAACAGTGTGGAAAGTTTCACGTATTATCGGATTTTGATGAAGGGAAACGCAGCTGTAGAAGAAAATTAGAGTGGCATAACACCCGAAGGCGAAGAAAGCCTGCGAATTCCAGATCTGCTGCTGATCGTGAACGTCAATCTGTTACTCAAAATGATGATTCCAATTATGATGGGGAAGCAAGACAAGATAGTTCAAATTTGAGTAGCGGTATAAACGAAAAAGGGGCGTCATCGGATCATGAAGATGAACCGGTTGCCATTCTGTGCTCGGCTCCAGATTCTCAGAATATTAATAATGATGGTGTTGTATCTTTTGTTGCTTCTGGTGAAACACAAGTAAATAGTGGAAAAGATGTTTCCAATATTTCTAATTCTCCCTCATATTGTGACAATAAGAGTGCTTACTCATCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCTGAATTTCCTAGAAGGCTACGGCACCAAATATTCCAATGGTTGGCAAGTATGCCTATAGAGCTGGAGGGATATATCCGTCCTGGGTGTACTATATTGACAATTTTTATAGCAATGCCAAAAATTATGTGGATAAATTTACTCAAAGACCCTCGGTGCTATGTCTGTGATCTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACCATACTGGTTCATCTGAATGACATGATCTATCAGGTTACAAAAGATGGGACTTCTGTGATGAAAGTCGAGGTAAACATGCAGGCACCAAGGCTTCAGTATGTTCATCCCACTTGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGGAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATCTGAAGTACGAGTATTGTGTTCCATCTCCACACAACTCAAATGGAGACAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTCATTGGTGACAAAGAAATTTGTGCTGAAATGAAGATGTTGCAGCAAAAATTAGATGTATCTCTCCTTTCTAAACAATTTCAATCTGCATCTGGTGGTTCAATCTGCAGCTCATGTGAAGCTTTTGCACTTAGACACACATTATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACCCTACTTCAGAAAATTTTGACAGAGTGATGACAGATTCACAAATTCAAAGATATTGTTATTTGTTGGACTTTCTAATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAGTCTTGACAGAAAGCATGAAATCAGATATTGTGATTAATAGGACGAGTGATGTTGACATGACACCACTACTGAAATGCATGCATAATGCTAGAGATGCCATGTATCAGAAACATCAGAAAGGTGGAGGTTCCATTTTGCACTCTGAAATGGACGGTGTTAAACTTACTCGGAGCTGCTCCCATGATAATATGTCATCAGTTGTTGCAGTTAACAGTCAGGGTACCCTGTCGAGAGCAGATTTAAAGTTGCTGACAAGTCCAACTTCAAATGACAAAAATGAAAGGATACCACTTTTGAAGAGGGAGATTATAATGAATGTGGAAGAGTTGCCTAAAAGATGTGACCGTCGATATCTTGCCAGGGGATTCCTTAGCTCTCAACGGCCAGCTATTTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGGGGTATGTGTAGCCGTCCTTCATCATGGGAGGGTAAGTGAGTTAGCAGTATCCATTAGACGGTGCTTGTTTAATTATTAG 2361 0.4261 MEPQSLVLPHMETEVEDPWDLTSLLDFNLDDEIPISFDLDKNSQLPLPESLDLPSNSNLQLHLPEIPTNDKVRKRDPRLACSNFLAGRVPCACPEMDAKLEEEENSLPGKKRARSARASASARCQVPGCEADITELKGYHRRHKVCLRCANATTVLLHGESKRYCQQCGKFHVLSDFDEGKRSCRRKLEWHNTRRRRKPANSRSAADRERQSVTQNDDSNYDGEARQDSSNLSSGINEKGASSDHEDEPVAILCSAPDSQNINNDGVVSFVASGETQVNSGKDVSNISNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPIELEGYIRPGCTILTIFIAMPKIMWINLLKDPRCYVCDLVAPGKMLSGRGTILVHLNDMIYQVTKDGTSVMKVEVNMQAPRLQYVHPTCFEAGKPMEFVACGRNLLQPKFRLLVSFSGKYLKYEYCVPSPHNSNGDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICAEMKMLQQKLDVSLLSKQFQSASGGSICSSCEAFALRHTLSSDLLVDIAWLLKDPTSENFDRVMTDSQIQRYCYLLDFLICNDSTIILGKILPNLIVLTESMKSDIVINRTSDVDMTPLLKCMHNARDAMYQKHQKGGGSILHSEMDGVKLTRSCSHDNMSSVVAVNSQGTLSRADLKLLTSPTSNDKNERIPLLKREIIMNVEELPKRCDRRYLARGFLSSQRPAIFVIVSVAVCLGVCVAVLHHGRVSELAVSIRRCLFNY 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1972g00001 786 Pfam SBP domain 124 198 IPR004333 GO:0003677
Gabi1972g00001 786 SUPERFAMILY SBT domain 122 201 IPR036893 GO:0003677|GO:0005634
Gabi1972g00001 786 Gene3D - 119 185 IPR036893 GO:0003677|GO:0005634
Gabi1972g00001 786 MobiDBLite consensus disorder prediction 191 247 - -
Gabi1972g00001 786 MobiDBLite consensus disorder prediction 200 215 - -
Gabi1972g00001 786 MobiDBLite consensus disorder prediction 216 239 - -
Gabi1972g00001 786 ProSiteProfiles Zinc finger SBP-type profile. 121 198 IPR004333 GO:0003677
Gabi1972g00001 786 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 85 598 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1972g00001 Gabi-Chr1972 6836 15338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1972g00001 1 780 SBP-box Gene Family AT5G18830 47.854 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi1972g00001 SBP 6.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1972g00001 - - aprc:113863838 1164.06