Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1970g00013 ATGGAGATAGAGCAAGCCACTGCCAATGACAATAATGTTATTACACAAAATGAAATGAGAGTTTCAAAAGGAAGAGAAAAGAGAGGAATATATCTTGTGTGGGAAGATTTGACTGTTGTGGTTCCAAATTTTGGCAATGGACACACTAAGAGATTGCTTAATGGTTTGAGTGGATATGCTGAACCTAACAGAATCATGGCTATTATGGGGCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTGGCAGGTAGACTCTCCGGAAATGTTATCATGTCTGGAAATGTGTTTTTAAATGGAAAGAAAGGAAGACTAGACCGTGGGGTTGTAGCTTATGTGACACAAGAAGACACATTGTTGGGAACACTAACAGTTAGAGAGACAATATCTTACTCAGCTAATCTAAGGCTTCCAGCTACCATGACCAAAAAAGAGGTAAATGACATTGTTGAGGGAACAATTATGGAGATGGGTCTTCAAGATTGTGCTGATAGGCTTATAGGGAATTGGCACTTAAGAGGTATAAGCGGTGGTGAAAAGAAAAGACTAAGCATAGCACTTGAAATCCTTACAAGGCCTTGCCTCTTGTTCCTTGATGAACCCACCAGTGGTCTTGATAGTGCCTCAGCATATTTTGTTACCCAAACATTGAGAAACATAGCTCATGATGGGAAGACTGTTATCTCTTCTATACATCAACCGAGTAGTGAGGTTTTTGCACTCTTTGATGATCTCTTTCTGCTTTCTGGGGGTCAAACTATATATTTTGGAGCAGCTGAAAAGGCAGTTGAGTTCTTTGCCAAAGCAGGATTCCCATGTCCAAGTAGAAGAAACCCTTCTGATCATTTCCTCCGTTGTATTAATTCAGACTTTGACACTGTCACAACGACCATGATGGCCTCCCAGAGAATACATGAACAAAAATCATTAACAGCATCCTTAATGAACTTATCAACTGCAGCAATCAAAGCAATACTCATAGAGAATTACCGATGGTCAGAGTATGCAACTACTGCAAGAGCAAGAATCAAAGAATTCTCAAACATTGAAGGACATGATTCTGAAAGTAACATCAAGAGCCAAGCCAAATGGTGGAAGCAACTATCAACACTGACCCATAGATCTTTCGTGAACATGTCTAGAGATGTAGGGTACTACTGGATAAGGATAATAATCTATGTCGCCTTATCTTTGTGTGTTGGAACAATCTTTTTTGAAGTTGGATCAAGTTATAGAGCCATTTTTGCAAGAGGAGGGTGTGGTGCTTTTATATCAGGTTTCATGACATTCATGGCCATAGGAGGCTTCCCATCCTTCATAGAAGAAATGAAGGTCTTCTACAAAGAAAGGCTCAATGGGTATTATGGCATTGCAGTTTACATTCTATCAAATTTTTTATCTTCCTTTCCCTTTGTGGCAGTGATGTCCATTGCTTCTGCAACTATAACCTACTATATGGTTAAGTTTCGTCCTGAGTTTTCGCATCTTTTGTATATCTGCCTGGATCTTATTGGTTGCATTGCGGTTGTGGAGAGTTCCATGATGATTATAGCTTCACTGGTTCCCAACTTCCTCATGGGAGTGATAATTGGAGCAGGATATATCGGTCTTATGATGATGACTGCTGGCTATTTTCGTCAGATCCATGATCTTCCAAAAATTTTCTGGCGTTACCCAATTTCATACATAAATTATGCAGCATGGGGATTGGAGGGAGCTTATAAGAATGACATGATTGGGCTGGAGTTTGATCCTTTAGTACCTGGTGGCCCAAAACTGAAAGGAGAAATCGTCCTTACAACCATGCTTGGCATGCAAGTTGATTACTCAAAATGGTGGGACTTAGCTGCAGTTATGGTCCTCCTCATATTGTGTAGAGTTCTTTTCTTTTTCATTCTGAAATTTAAGGAGAGAGCTGCACCTTTTTTGCATAGTATCTATGCCAAGCAAACTCTGCAACGTATCAAGAAGAGGCCTTCGTTCAGGAAAGCACCATCTTTCCCTTCCAAGAGGCACCAATCTCTGCATCCCTTGTCTTCTCAAGAGGGTCTCAACTCCCCAATTCAATAG 2073 0.4047 MEIEQATANDNNVITQNEMRVSKGREKRGIYLVWEDLTVVVPNFGNGHTKRLLNGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSGNVIMSGNVFLNGKKGRLDRGVVAYVTQEDTLLGTLTVRETISYSANLRLPATMTKKEVNDIVEGTIMEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPCLLFLDEPTSGLDSASAYFVTQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGAAEKAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDTVTTTMMASQRIHEQKSLTASLMNLSTAAIKAILIENYRWSEYATTARARIKEFSNIEGHDSESNIKSQAKWWKQLSTLTHRSFVNMSRDVGYYWIRIIIYVALSLCVGTIFFEVGSSYRAIFARGGCGAFISGFMTFMAIGGFPSFIEEMKVFYKERLNGYYGIAVYILSNFLSSFPFVAVMSIASATITYYMVKFRPEFSHLLYICLDLIGCIAVVESSMMIIASLVPNFLMGVIIGAGYIGLMMMTAGYFRQIHDLPKIFWRYPISYINYAAWGLEGAYKNDMIGLEFDPLVPGGPKLKGEIVLTTMLGMQVDYSKWWDLAAVMVLLILCRVLFFFILKFKERAAPFLHSIYAKQTLQRIKKRPSFRKAPSFPSKRHQSLHPLSSQEGLNSPIQ 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1970g00013 690 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524|GO:0016887
Gabi1970g00013 690 Pfam ABC transporter 53 204 IPR003439 GO:0005524
Gabi1970g00013 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 32 276 IPR003439 GO:0005524
Gabi1970g00013 690 FunFam ABC transporter G family member 11 26 270 - -
Gabi1970g00013 690 SMART AAA_5 62 261 IPR003593 GO:0016887
Gabi1970g00013 690 Pfam ABC-2 type transporter 368 577 IPR013525 GO:0016020|GO:0140359
Gabi1970g00013 690 CDD ABCG_EPDR 29 258 - -
Gabi1970g00013 690 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 18 659 - -
Gabi1970g00013 690 MobiDBLite consensus disorder prediction 660 690 - -
Gabi1970g00013 690 Pfam ABC-2 type transporter 233 300 IPR043926 GO:0140359
Gabi1970g00013 690 MobiDBLite consensus disorder prediction 673 690 - -
Gabi1970g00013 690 Gene3D - 20 271 IPR027417 -
Gabi1970g00013 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1970g00013 Gabi-Chr1970 125901 131970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1970g00013 51 247 Calmodulin-binding Proteins AT2G36910 29.954 1.27e-12 69.7