Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1970g00012 ATGCTGAAGACCAAAATGGAGATAGAAGCAGCCTGTGGTAGCAACAAAGATTGCAACTTTGGTCCTAATGAGAGTGATGTGGCATACAGTGGCTTTGATAGGGGAAGCTTCTTGGCATGGGAAGATCTTAGAGTGATGCTACCAAACTTTGGGAAGGGACCAACTAAGAGATTGCTTAATGGACTTAATGGGTATGCTGAGCCTGGTAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCAACCCTTCTTGATTCACTAGCAGGTAGACTCTCAAAAAATGTGGTCATGACAGGAAATGTTCATCTCAATGGGAAGAAAAAAAGCCTAGGCTATGGTTTTGTTGCATACGTAACTCAAGAGGATGTGCTACTGGGAACTCTTACTGTGAAGGAAACCATATCTTATTCAGCACATCTACGCCTACCAACTACAATGACCAAAGAAGAAGTTAGTAGCATTGTGGATGGAACAATCATAGAAATGGGTCTCCAAGACTGTGCTGATAGGTTGATTGGTAACTGGCACTTGAGAGGTATAAGTGGTGGGGAGAAGAAAAGACTTAGCATTGCACTTGAGATCCTTACAAGGCCTCGCTTACTATTTCTTGATGAACCCACCAGTGGCCTAGATAGTGCTTCAGCTTTTTTTGTTGTTCAAACTCTTAGAAATGTTGCTCGTGATGGAAGGACTGTTATCTCTTCGATTCACCAGCCAAGCAGCGAAGTGTTTGCACTCTTTGATGACCTTTTCTTATTATCTGGTGGCGAAACAGTTTATTTTGGTGAAGCAAAAATGGCAATAGAGTTTTTTGCTGAAGCTGGTTTTCCTTGTCCACGTAAAAGAAACCCTTCTGATCACTTCCTCCGATGTATCAATTCTGACTTCGACATTGTAACAGCTACACTGAAGGGATCTCAAAGAATTCCTGACGTTCCAAATTCATCAGATCCTTTCATGAATCTGGCTACAGCACAGATTAAGGCAATGCTAGTTGAGAAATATAGGCGTTCAAAGTATGCCAGAAGGGCAAAAGACAGGATTCAAGAACTATCAACCAATGAAGGGCTTGAAACTGAGACACAAAATGGAAGTCAAGCTAGTTGGTGGAAGCAACTCTTGACTTTGACAAGGAGATCATTTGTCAACATGTGTAGAGATGTGGGTTACTACTGGTTGAGGATTATAATTTACATCATTGTATCTATATGTGTTGGAACTATTTATTTTGATGTTGGCTATAGCTACACTTCGATCCTGGCTCGCGGTGCCTGTGGTGCATTTATATCAGGATTTATGACATTCATGTCAATTGGAGGCTTTCCATCATTTATTGAAGAAATGAAGGTTTTTTATCGAGAAAGGCTTAATGGATATTATGGAGTTGCAGCATATATTTTAGCCAATTTCCTTTCTTCTTTCCCATTCTTGGTTGCTATTGCTCTTACTTCTAGCACCATCACTTATAACATGGTGAAGTTCCGGCCAGGATTCAGTCACTTTGTGTTTTTCACTCTCAACATCTATAGCTGCATCTCTGTAATCGAGAGCCTAATGATGGTTGTAGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGGGCTGGAATAATTGGAATCATGATGATGACCTCTGGATTCTTCAGGTTGCTATCTGATCTTCCAAAGCCGGTTTGGCGCTACCCGATTTCATATATCAGTTATGGCGCATGGGCAATACAGGGTTCCTACAAGAATGACTTGCTTGGGCTTGAGTTTGAACCTCTGATACCTGGTGACCCAAAATTGACAGGAGAATACGTCATCACACACATGTTAGGCATTGAATTGAACCATTCCAAGTGGTGGGACTTAGCAGCACTAATAGTCATTCTCATATTTTACAGAGTTCTGTTCTTTACTGTTCTGAAGTTGAAGGAAAGAGCATCTCCATTATTTAAGACACTTTATGCCAAGAGAACCTTACAACAGCTTGAAAAAAGACCTTCTTTCAGGAAGATGCCATCTTTCCCTTCCCAGAGGCATCAACCCCTCCATTCACTGTCTTCTCAAGAGGGTCTTGATTCTCCACTCCAGTAG 2091 0.4137 MLKTKMEIEAACGSNKDCNFGPNESDVAYSGFDRGSFLAWEDLRVMLPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVHLNGKKKSLGYGFVAYVTQEDVLLGTLTVKETISYSAHLRLPTTMTKEEVSSIVDGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKMAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIPDVPNSSDPFMNLATAQIKAMLVEKYRRSKYARRAKDRIQELSTNEGLETETQNGSQASWWKQLLTLTRRSFVNMCRDVGYYWLRIIIYIIVSICVGTIYFDVGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTSSTITYNMVKFRPGFSHFVFFTLNIYSCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGSYKNDLLGLEFEPLIPGDPKLTGEYVITHMLGIELNHSKWWDLAALIVILIFYRVLFFTVLKLKERASPLFKTLYAKRTLQQLEKRPSFRKMPSFPSQRHQPLHSLSSQEGLDSPLQ 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1970g00012 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 33 665 - -
Gabi1970g00012 696 Pfam ABC-2 type transporter 374 583 IPR013525 GO:0016020|GO:0140359
Gabi1970g00012 696 CDD ABCG_EPDR 35 264 - -
Gabi1970g00012 696 SMART AAA_5 68 239 IPR003593 GO:0016887
Gabi1970g00012 696 FunFam ABC transporter G family member 11 32 276 - -
Gabi1970g00012 696 MobiDBLite consensus disorder prediction 673 696 - -
Gabi1970g00012 696 MobiDBLite consensus disorder prediction 664 696 - -
Gabi1970g00012 696 Pfam ABC-2 type transporter 239 296 IPR043926 GO:0140359
Gabi1970g00012 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 272 IPR027417 -
Gabi1970g00012 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 282 IPR003439 GO:0005524
Gabi1970g00012 696 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Gabi1970g00012 696 Pfam ABC transporter 59 210 IPR003439 GO:0005524
Gabi1970g00012 696 Gene3D - 38 276 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1970g00012 Gabi-Chr1970 112358 120361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1970g00012 54 251 Calmodulin-binding Proteins AT2G36910 30.622 4.57e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1970g00012 K05681 - gmx:100807692 1236.48