Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi196g00009 ATGAGTTTTGGGGGGTTTCTTGAGAACAAATCAGGTGGTGGAGGTGCTAGGATTGTAGCAGATATACCTTACAGCAACGGTATCAACCACAATAATAACAGCATCAACAACGATACAATGCCCTCTGGTGCAATCTCACACCCTCGATTAGCCACTCCAACTTTGGTTAAATCCATGTTCAACTCTCCTGGGCTCTCTCTGGCACTTCAAACTAATATAGATGGACAAGGTGATGTGAACGAGAATTTTGAGACAAATGGTTTGAGAAGGAACAGGGAAGAAGAACATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCCAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATACAAGAACTTGAAACGCTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGACTTGAACTCAGCAAAAGGCTTTGTTTGGAAACGAGGCAGGTGAAGTTTTGGTTCCAAAATCGAAGAACCCAAATGAAGACTCAATTGGAACGCCATGAGAACTCGCTGCTAAGGCAAGAGAATGATAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCTATGAGGAACCCTATATGCTCAAACTGTGGAGGTCCAGCTATTATCGGTGAGATTTCACTTGAAGAACAGCATATTAGGATTGAGAATGCTCGATTGAAGGATGAACTAGACCGAGTTTGTGCCCTTGCTGGCAAGTTTTTAGGTCGCCCCATTTCTTGTTTAACAAGCTCAATTGGTCCTCCATTGCCAAACTCAAGTTTGGAGCTTGGTGTTGGCAGTAATGGTTTTGATGGTTTGAACACTGTCCCTTCAACATTGCCTTTGGGGCATGATTTTGGGGTTGGGATATCTAGCCCTTTAGGCATGGTATCACCTCCAACAAGAGCAACAACTTTGGTCACTGGCTTTGACAGATCAGTAGAAAGGTCTATGTTTCTAGAGCTTGCTTTGGCTGCAATGGAAGAGTTGGTGAAGATGGCTCAAACTGGGGACCCTCTTTGGATCAGAAGTTTAGAAGGTGGAAGAGAAATTCTGAACCATGAGGAATACACAAGGATAATGGTTCCTCCTTGCATTGGCTTGAGACCAAATGGTTTTGTCTCAGAAGCCTCTAGAGAAACTGGCATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGATATGTTCCCTTGTATGATTGCAAGAACCTCCACAACTGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGTGCCCTTCAACTAATGCATGCTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTCCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCTGTGGTAGATGTGTCCATAGATACCATCCGAGAAACTTCTGGTGCACCCACTTTTCTGAACTGCAGAAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGACGAAAGCCAAGTTCATCAGCTCTACAGGCCCTTGTTAAGATCAGGGATGGGCTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCCTAGCCATCCTTATGTCCTCAGCAGCTCCCTCTAGAGAACACTCAGCAATAACCTCAGGTGGAAGGCGTAGCATGTTGAAGCTGGCGCAGCGCATGACAAACAACTTCTGTGCTGGTGTATGTGCATCAACGGTGCACAAATGGAACAAGCTGAACGCTGGGAACTTTGGTGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGACGATCCAGGTGAACCACCGGGAATTGTGCTGAGTGCAGCCACCTCCGTGTGGCTCCCAGTTTCACCACACAGACTCTTCAATTTCCTAAGAGACGAGAGGCTTCGAAGCGAGTGGGATATACTCTCCAATGGTGGACCCATGCAAGAGATGACTCACATCGCCAAGGGTCAAGACCATGCCAACTGTGTCTCCCTCTTACGAGCCGGTGCTATGAATGCGAACCAGAGCAGCATGTTGATATTGCAGGAGACATGCACAGACGCGTCGGGTTCGCTTGTGGTGTACGCGCCGGTGGATATCCCCGCCATGCACGTCGTGATGAACGGCGGTGACTCGGCGTACGTGGCGCTTCTTCCGTCGGGGTTCGCCGTCGTCCCCGATGGATCCGGCGGTTGCGGTGAAGGTCATGGTGGCGCGTCTCAGCAGAGGATGAGTGGGTCCCTTTTGACGGTGGCGTTTCAGATACTTGTGAACAGCCTCCCCACGGCGAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATTTCGTGCACTGTTCAGAAGATAAAAGCAGCACTTCAATGTGGGAGCTGA 2457 0.4843 MSFGGFLENKSGGGGARIVADIPYSNGINHNNNSINNDTMPSGAISHPRLATPTLVKSMFNSPGLSLALQTNIDGQGDVNENFETNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELETLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAIIGEISLEEQHIRIENARLKDELDRVCALAGKFLGRPISCLTSSIGPPLPNSSLELGVGSNGFDGLNTVPSTLPLGHDFGVGISSPLGMVSPPTRATTLVTGFDRSVERSMFLELALAAMEELVKMAQTGDPLWIRSLEGGREILNHEEYTRIMVPPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSNRWSDMFPCMIARTSTTEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLRSGMGFGAQRWVATLQRQCECLAILMSSAAPSREHSAITSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNFGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPHRLFNFLRDERLRSEWDILSNGGPMQEMTHIAKGQDHANCVSLLRAGAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGSGGCGEGHGGASQQRMSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCGS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi196g00009 818 SUPERFAMILY Homeodomain-like 105 179 IPR009057 -
Gabi196g00009 818 SMART HOX_1 120 183 IPR001356 GO:0003677
Gabi196g00009 818 Pfam START domain 332 557 IPR002913 GO:0008289
Gabi196g00009 818 SMART START_1 332 557 IPR002913 GO:0008289
Gabi196g00009 818 FunFam Homeobox-leucine zipper protein HDG1 109 195 - -
Gabi196g00009 818 CDD START_ArGLABRA2_like 327 556 - -
Gabi196g00009 818 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 118 815 IPR042160 -
Gabi196g00009 818 FunFam Homeobox-leucine zipper protein GLABRA 2 332 556 - -
Gabi196g00009 818 MobiDBLite consensus disorder prediction 71 129 - -
Gabi196g00009 818 Gene3D - 109 195 - -
Gabi196g00009 818 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Gabi196g00009 818 Coils Coil 173 208 - -
Gabi196g00009 818 CDD homeodomain 121 179 IPR001356 GO:0003677
Gabi196g00009 818 ProSiteProfiles START domain profile. 323 560 IPR002913 GO:0008289
Gabi196g00009 818 SUPERFAMILY Bet v1-like 325 557 - -
Gabi196g00009 818 MobiDBLite consensus disorder prediction 85 102 - -
Gabi196g00009 818 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Gabi196g00009 818 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Gabi196g00009 818 SUPERFAMILY Bet v1-like 578 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi196g00009 Gabi-Chr196 88377 95275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi196g00009 1 818 Homeobox Transcription Factor Family AT3G61150 64.643 0.0 1039
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi196g00009 START 3.5e-55 CL0209