Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi196g00008 ATGAGTTTTGGGGGGTTTCTTGAGAACAAATCAGGTGGTGGAGGTGCTAGGATTGTAGCAGATATACCTTACAGCAACGGTATCAACCACAATAATAACAGCATCAACAACGATACAATGCCCTCTGGTGCAATCTCACACCCTCGATTAGCCACTCCAACTTTGGTTAAATCCATGTTCAACTCTCCTGGGCTCTCTCTGGCACTTCAAACTAATATAGATGGACAAGGTGATGTGAACGAGAATTTTGAGACAAATGGTTTGAGAAGGAACAGGGAAGAAGAACATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCCAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATACAAGAACTTGAAACGCTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGACTTGAACTCAGCAAAAGGCTTTGTTTGGAAACGAGGCAGGTGAAGTTTTGGTTCCAAAATCGAAGAACCCAAATGAAGACTCAATTGGAACGCCATGAGAACTCGCTGCTAAGGCAAGAGAATGATAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCTATGAGGAACCCTATATGCTCAAACTGTGGAGGTCCAGCTATTATCGGTGAGATTTCACTTGAAGAACAGCATATTAGGATTGAGAATGCTCGATTGAAGGATGAACTAGACCGAGTTTGTGCCCTTGCTGGCAAGTTTTTAGGTCGCCCCATTTCTTGTTTAACAAGCTCAATTGGTCCTCCATTGCCAAACTCAAGTTTGGAGCTTGTAGAAAGGTCTATGTTTCTAGAGCTTGCTTTGGCTGCAATGGAAGAGTTGGTGAAGATGGCTCAAACTGGGGACCCTCTTTGGATCAGAAGTTTAGAAGGTGGAAGAGAAATTCTGAACCATGAGGAATACACAAGGATAATGGTTCCTCCTTGCATTGGCTTGAGACCAAATGGTTTTGTCTCAGAAGCCTCTAGAGAAACTGGCATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGATATGTTCCCTTGTATGATTGCAAGAACCTCCACAACTGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGTGCCCTTCAACTAATGCATGCTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTCCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCTGTGGTAGATGTGTCCATAGATACCATCCGAGAAACTTCTGGTGCACCCACTTTTCTGAACTGCAGAAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGACGAAAGCCAAGTTCATCAGCTCTACAGGCCCTTGTTAAGATCAGGGATGGGCTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCCTAGCCATCCTTATGTCCTCAGCAGCTCCCTCTAGAGAACACTCAGCAATAACCTCAGGTGGAAGGCGTAGCATGTTGAAGCTGGCGCAGCGCATGACAAACAACTTCTGTGCTGGTGTATGTGCATCAACGGTGCACAAATGGAACAAGCTGAACGCTGGGAACTTTGGTGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGACGATCCAGGTGAACCACCGGGAATTGTGCTGAGTGCAGCCACCTCCGTGTGGCTCCCAGTTTCACCACACAGACTCTTCAATTTCCTAAGAGACGAGAGGCTTCGAAGCGAGTGGGATATACTCTCCAATGGTGGACCCATGCAAGAGATGACTCACATCGCCAAGGGTCAAGACCATGCCAACTGTGTCTCCCTCTTACGAGCCGGACAGGCTATGAATGCGAACCAGAGCAGCATGTTGATATTGCAGGAGACATGCACAGACGCGTCGGGTTCGCTTGTGGTGTACGCGCCGGTGGATATCCCCGCCATGCACGTCGTGATGAACGGCGGTGACTCGGCGTACGTGGCGCTTCTTCCGTCGGGGTTCGCCGTCGTCCCCGATGGATCCGGCGGTTGCGGTGAAGGTCATGGTGGCGCGTCTCAGCAGAGGATGAGTGGGTCCCTTTTGACGGTGGCGTTTCAGATACTTGTGAACAGCCTCCCCACGGCGAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATTTCGTGCACTGTTCAGAAGATAAAAGCAGCACTTCAATGTGGGAGCTGA 2310 0.4861 MSFGGFLENKSGGGGARIVADIPYSNGINHNNNSINNDTMPSGAISHPRLATPTLVKSMFNSPGLSLALQTNIDGQGDVNENFETNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELETLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAIIGEISLEEQHIRIENARLKDELDRVCALAGKFLGRPISCLTSSIGPPLPNSSLELVERSMFLELALAAMEELVKMAQTGDPLWIRSLEGGREILNHEEYTRIMVPPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSNRWSDMFPCMIARTSTTEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLRSGMGFGAQRWVATLQRQCECLAILMSSAAPSREHSAITSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNFGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPHRLFNFLRDERLRSEWDILSNGGPMQEMTHIAKGQDHANCVSLLRAGQAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGSGGCGEGHGGASQQRMSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCGS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi196g00008 769 ProSiteProfiles START domain profile. 273 510 IPR002913 GO:0008289
Gabi196g00008 769 SMART HOX_1 120 183 IPR001356 GO:0003677
Gabi196g00008 769 Pfam START domain 282 507 IPR002913 GO:0008289
Gabi196g00008 769 SUPERFAMILY Bet v1-like 276 507 - -
Gabi196g00008 769 FunFam Homeobox-leucine zipper protein HDG1 109 195 - -
Gabi196g00008 769 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Gabi196g00008 769 SUPERFAMILY Bet v1-like 528 754 - -
Gabi196g00008 769 SMART START_1 282 507 IPR002913 GO:0008289
Gabi196g00008 769 FunFam Homeobox-leucine zipper protein GLABRA 2 282 506 - -
Gabi196g00008 769 MobiDBLite consensus disorder prediction 71 129 - -
Gabi196g00008 769 SUPERFAMILY Homeodomain-like 105 179 IPR009057 -
Gabi196g00008 769 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Gabi196g00008 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 118 766 IPR042160 -
Gabi196g00008 769 Coils Coil 173 208 - -
Gabi196g00008 769 CDD homeodomain 121 179 IPR001356 GO:0003677
Gabi196g00008 769 CDD START_ArGLABRA2_like 277 506 - -
Gabi196g00008 769 Gene3D - 109 195 - -
Gabi196g00008 769 MobiDBLite consensus disorder prediction 85 102 - -
Gabi196g00008 769 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi196g00008 Gabi-Chr196 88375 95275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi196g00008 1 769 Homeobox Transcription Factor Family AT3G61150 63.822 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi196g00008 START 3.1e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi196g00008 K09338 - gmx:100787537 1289.63