Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi196g00007 ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCAGGAGGGGATTTAACTACAAAAAGAGTTAAGTTTGATCAGGAGACTGAAGGAAAGGTTAATGAGGAAACAAATCCTATTGAAAGAGGAGGTAAAGATCAGGAGCAGCATTTAGATGCATCAAAAGAAACTACTGTTGATCAGCTTCCAAAAGAATTACATGAAATGAAAATTAAAGACGATAAGGGCAAAAACAACAATGAAAAGGATATGGAGCCAACTATTGTGAACGGAAATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCAGAACGTGTGGTTGGTACTGGTTCTTTCGGTGTTGTTTATCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCAATAAAGAAAGTATTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGTGTGCTTGACCATACTAATGTTCTTAAATTAAAGCACTGTTTCTATTCAACGGCCGAGAAAGATGAGTTGTATCTCAACCTAGTTTTGGAGTATGTACCTGAAACTGTGTACAGAGTTTCAAAGCAATATGTCAGGATACACCAACACATGCCTATCATTTACGTGCAACTATATATGTACCAGATATGCCGTGGTTTAAATTATTTGCATCATGTGATCGGAGTCTGTCATCGGGACATCAAACCCCAGAATCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGCGAACCCAACATATCATACATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGGGCAACGGAATACACAACTGCTATTGATCTTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCAATGTTTCCCGGAGAGAGTGGCGTTGATCAGTTAGTAGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAGTTTAAGTTTCCTCAGATAAAAGCGCACCCATGGCACAAGATTTTTCACAAAAGGATGCCTCCTCAAGCAGTGGATCTTGTGTCAAGAATGCTTCAATATTCACCAAATCTACGTTGCACTGCTCTGGAAGCATGTGCACATCCCTTCTTTGATGATCTACGAGACCGGAATGCATGCTTGCCGAATGGACAAGCATTGCCTCCTTTGTTTGATTTCACAGCTCAAGAACTGGCTGACGCATCCGATGAGTTGCGCAGACGTCTCATTCCTGAGCATGCAAGGGAGTTGAATTGA 1368 0.4137 MNMMRRLKSIASGRTSISSDPGGDLTTKRVKFDQETEGKVNEETNPIERGGKDQEQHLDASKETTVDQLPKELHEMKIKDDKGKNNNEKDMEPTIVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGEAVAIKKVLQDKRYKNRELQVMRVLDHTNVLKLKHCFYSTAEKDELYLNLVLEYVPETVYRVSKQYVRIHQHMPIIYVQLYMYQICRGLNYLHHVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDLWSAGCVLAELLLGQPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPQAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDRNACLPNGQALPPLFDFTAQELADASDELRRRLIPEHARELN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi196g00007 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Gabi196g00007 455 SMART serkin_6 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi196g00007 455 SUPERFAMILY Protein kinase-like (PK-like) 123 435 IPR011009 -
Gabi196g00007 455 ProSiteProfiles Protein kinase domain profile. 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi196g00007 455 ProSitePatterns Protein kinases ATP-binding region signature. 130 154 IPR017441 GO:0005524
Gabi196g00007 455 Gene3D Phosphorylase Kinase; domain 1 109 203 - -
Gabi196g00007 455 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 88 453 - -
Gabi196g00007 455 MobiDBLite consensus disorder prediction 1 101 - -
Gabi196g00007 455 FunFam Shaggy-related protein kinase kappa 204 452 - -
Gabi196g00007 455 CDD STKc_GSK3 119 411 IPR039192 -
Gabi196g00007 455 MobiDBLite consensus disorder prediction 26 89 - -
Gabi196g00007 455 MobiDBLite consensus disorder prediction 9 23 - -
Gabi196g00007 455 Gene3D Transferase(Phosphotransferase) domain 1 204 452 - -
Gabi196g00007 455 Pfam Protein kinase domain 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi196g00007 455 FunFam Glycogen synthase kinase-3 beta 108 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi196g00007 Gabi-Chr196 67712 73115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi196g00007 130 416 Core Cell Cycle Gene Families AT1G76540 35.135 2.29e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi196g00007 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi196g00007 K27414 - gmx:100786458 835.869