Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi196g00005 ATGCAGACTTCAAACCCGCCACCTCCATCTCCACCTGATTCCGCCGCCGTGGACACCGCGCCGTTCCTCCACCGCAGCCGCAGCTTCTTCCGCCGTACGCCGCCTCCGCCGCAGCTTAGGACGGCCGCGCGGTTCTTCAGGCACGCGAGCGGGCGGCGCATGATGCTCCGGGAGCCGTCGGTGCGGGTCCGGGAGGCGGCGGCGGCGGAGGTGGAGGAGCGGCAGAGCGACTGGGCTTACTCAAAGCCGGTGGTGGTGCTTGACGTTCTGTGGAACTTAGCGTTCCTTGCTATTGGGGTCACCGTTTTGGGTTTGAGTGCCAAGGAGGAACCTTGTGTTCCCTTAAGGGTGTGGATTGTGGGGTACTTGTTGCAAGGTGTGTTTCACTCTCTTTGTGTTGTTGTTGAATTCAGAAGGAGGAGGACCCAATTGGGTTCTTCCCTTTCTGAGCAGAATAGAAGTTTCAGTTCTGGGAGTGATGATGAGTATTATGCTGTAGAGCAGTTTCAGGAGTGTGAGGGAAACAGCATCATGAAACACGTAGAGTCTGCAAATACCATGCTTTCATTCATGTGGTGGATGGTTGGGTTCTACTGGGTGACTGCTGGTGGCCAGAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATTACATTTCTTGCTTTTGATGTTGTGATTGTACTGATCTGTATTGCTGTTGCATGTCTTATCGGTATTGCCGTTTGCTGTTGTCTGCCATGCATACTTGCTATTTTGTATGCAGTGGCAGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCAGTTGCCAAAATATGAGTTCAGAATGATAAAGGAATTTAAGGAAGAAGGTGAAATCCAAGAATCTTCCAGAGGAATAATGACGGAATGTGACAGTGATACAGCTTCTGAACATGTTATTGCCTTAGAAGATGCAGAATGCTGTATCTGTCTTTCTGCCTATGATGATGGTGTTGAACTTAGAGAGCTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTAATCAATGCTACCTGTCCTCTCTGCAAGTTTAACATTTTGAGGATTGGTAATCACCATCAAGAAGTATGA 1113 0.496 MQTSNPPPPSPPDSAAVDTAPFLHRSRSFFRRTPPPPQLRTAARFFRHASGRRMMLREPSVRVREAAAAEVEERQSDWAYSKPVVVLDVLWNLAFLAIGVTVLGLSAKEEPCVPLRVWIVGYLLQGVFHSLCVVVEFRRRRTQLGSSLSEQNRSFSSGSDDEYYAVEQFQECEGNSIMKHVESANTMLSFMWWMVGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICIAVACLIGIAVCCCLPCILAILYAVADQEGATKEEIDQLPKYEFRMIKEFKEEGEIQESSRGIMTECDSDTASEHVIALEDAECCICLSAYDDGVELRELPCNHHFHCTCIDKWLLINATCPLCKFNILRIGNHHQEV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi196g00005 370 SMART ring_2 316 356 IPR001841 -
Gabi196g00005 370 SUPERFAMILY RING/U-box 306 363 - -
Gabi196g00005 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 361 IPR013083 -
Gabi196g00005 370 ProSiteProfiles Zinc finger RING-type profile. 316 357 IPR001841 -
Gabi196g00005 370 PANTHER TARGET OF ERK KINASE MPK-1 50 360 - -
Gabi196g00005 370 Pfam Ring finger domain 315 357 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi196g00005 Gabi-Chr196 51969 55484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi196g00005 4 368 C3H Transcription Factor Family AT1G68070 46.739 1.87e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi196g00005 - - gmx:100795425 583.178