Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi196g00001 ATGCCTCGTGGAACGCTTGAAGTTATTCTTGTTAGCGCAAAAGGGCTTCATGATAGTGATTTTTTCAAGAAAATGGATCCTTATGTGATCCTCACTTATAGGGCACAAGAACACAGAAGCAGTGTTGCTCAAGGTGCAGGATCTAATCCCAGTTGGAATGAAAGCTTCCTTTTTACAGTTTCTGACAATGTTTCTGAGCTTAATTTGAGGCTAATGGACAAAGATACGTTTACCAAGGATGATTTCCTTGGTGAGGCAAAAATTAATTTGGAACCAGTGTTTGCTGAGGGTAGCATTCCACAAACTGTTTACAATGTTGTGAGGAATCAGAAATACAGTGGAGAAGTTAAGTTGGCTCTCACTTTTCATCCTGAGTGGCAGTGA 384 0.4036 MPRGTLEVILVSAKGLHDSDFFKKMDPYVILTYRAQEHRSSVAQGAGSNPSWNESFLFTVSDNVSELNLRLMDKDTFTKDDFLGEAKINLEPVFAEGSIPQTVYNVVRNQKYSGEVKLALTFHPEWQ 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi196g00001 127 PANTHER C2 DOMAIN-CONTAINING 1 123 - -
Gabi196g00001 127 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 125 IPR035892 -
Gabi196g00001 127 Pfam C2 domain 4 98 IPR000008 -
Gabi196g00001 127 Gene3D C2 domain 2 125 IPR035892 -
Gabi196g00001 127 SMART C2_3c 5 102 IPR000008 -
Gabi196g00001 127 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi196g00001 Gabi-Chr196 1109 2531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi196g00001 4 94 C2H2 Transcription Factor Family AT4G21160 35.165 4.21e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi196g00001 - - gmx:100814819 209.92