Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1968g00004 ATGGAGTTTGATCCAACCTTCCAAGACCTTTTTAGCTTTTTTGAAGAAAATCCCTTCCCAAATCCAGAAAACAACACTTTGTTGCAATCCAACACTTTAAACCATTTTGAGGATAATAACATGAATGTAGTACTTGACCAAAATCCTGCACTTGTGATGGAGGATCCTTCCTTCATTGTTAACCCTTTGTATGAAATCTCTACTCCTTCATTAGGAGAGTCTTTTGAGGCTACTCTCCAAAATGGGTCCCTCAACAATCCCATGAATTTCGTACCAAACAACCAAACAGATGCTTTGCATGGCCACCATAGTGATAAAGCCATGTGGGATCTTTCACAAACCACAATTCAATCATCTATAGCTTCTTCATCCTCTCAGCCACTATCCCCCAATTCTGATAAATATGGATTGGTGTTGAGGGCCACACTCGAAAAGGAGCTTTCACCCTTCAATAGAGACGATCATTGTGATGTTGAACAAAGACATGATGATGATGGTGAGAAGGTGCAACAAACAATAATAAATGTACAAAATGATAACAACATTAATGCTAATATAATCAAAGGGACTTGGACACACGATGAGGATAGGGTTCTTGTTGAATTGGTGGATCGATATGGTATGAAGAAATGGTCCCAAATTGCAAATTTTCTAGAGGGCAGGGCTGGGAAGCAATGCCGAGAGAGATGGCTTAATCATCTTCGCCCAAATATTAGGAAGGATCCTTGGACCATAGAGGAAGACATGATGTTGATCAGATGTCACCAAGAAGTTGGAAATAAATGGGCAGAGATTGCAAGGAGATTGCCAGGTAGGACTGAGAACAACGTCAAGAATCATTGGAACACCACCAAGCGCCGCCAGAATACAAAGAAAGGGAAAAACAAAGCAATCACTTATGAAGGATCATTGCTTCTTTATTCATACATCAAAAGTGTCAGTGGAGAACAACTTAACAAATCCACAAGCAACATGAACATGTTAAGTAATGGTTGTAATAATCTAGCTCCTATGTTTCCATATGGATCCTCAAATGGTGGTTTCAGCTCACAAGGTTGGGCAACTAATCAAGTGTATAATCAGAACCATGCTTTCACTGGAAATGGTGGATACGTGCCAATGCAGGTAAATGTTGATGGATTCGCAACTGGGTCTGTAGTAGATGGTGGAAATGTTGACTATGGAAATCTTGGTGCGTGA 1200 0.4025 MEFDPTFQDLFSFFEENPFPNPENNTLLQSNTLNHFEDNNMNVVLDQNPALVMEDPSFIVNPLYEISTPSLGESFEATLQNGSLNNPMNFVPNNQTDALHGHHSDKAMWDLSQTTIQSSIASSSSQPLSPNSDKYGLVLRATLEKELSPFNRDDHCDVEQRHDDDGEKVQQTIINVQNDNNINANIIKGTWTHDEDRVLVELVDRYGMKKWSQIANFLEGRAGKQCRERWLNHLRPNIRKDPWTIEEDMMLIRCHQEVGNKWAEIARRLPGRTENNVKNHWNTTKRRQNTKKGKNKAITYEGSLLLYSYIKSVSGEQLNKSTSNMNMLSNGCNNLAPMFPYGSSNGGFSSQGWATNQVYNQNHAFTGNGGYVPMQVNVDGFATGSVVDGGNVDYGNLGA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1968g00004 399 CDD SANT 242 285 IPR001005 -
Gabi1968g00004 399 FunFam Transcriptional activator Myb isoform A 187 240 - -
Gabi1968g00004 399 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
Gabi1968g00004 399 Pfam Myb-like DNA-binding domain 191 251 - -
Gabi1968g00004 399 Gene3D - 187 239 - -
Gabi1968g00004 399 PANTHER MYB PROTEIN-RELATED 157 310 - -
Gabi1968g00004 399 SUPERFAMILY Homeodomain-like 185 281 IPR009057 -
Gabi1968g00004 399 ProSiteProfiles Myb-like domain profile. 183 234 IPR001005 -
Gabi1968g00004 399 SMART sant 187 236 IPR001005 -
Gabi1968g00004 399 SMART sant 239 287 IPR001005 -
Gabi1968g00004 399 Gene3D - 241 303 - -
Gabi1968g00004 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 238 IPR017930 -
Gabi1968g00004 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 289 IPR017930 -
Gabi1968g00004 399 CDD SANT 190 234 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1968g00004 Gabi-Chr1968 140774 143692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1968g00004 184 322 MYB Transcription Factor Family AT4G18770 58.571 2.65e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1968g00004 Myb_DNA-bind_6 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1968g00004 K09422 - ccaj:109799074 245.743