Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1966g00020 ATGGCCCTGCTGAGAATGGCTCAGCTTAACAATGCCAACAACAATAACAACAGTGGGATCCAACAACAAATAGTGAACCCTGTGTTCCATGATTTTCTAGGCATGAAGAAGAACCCCAATGACTCCAATGTCCTTTTGGCCCCTAAAACCACCCATCTCCATGTTAGGCCCCCTTCCCCTTCTTCCACCACCGTGTCCCGTGGCGGTGGCCCCTTCTCAACCACCTCCGACATTGGTTCCGAAAGACAGGTAGGGAATCATCTTGAGGGAGTTCCATTCTATGGTCCGAGGAGTGATTTTTCTGGCGCTGAGATAGGTAATAGACTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACCTTTATGGGTTCCTCCAGAGATGCCTTTCAAATGGGCCCTGATTCCCTTCAAAACTCACATTTGATGAAGATACTCCGAAATGCAGCTGGAGGGGAGCGCCTTAGAAGGTCCAATGATGATGAAGTGTTTCTTGGTATACAGTCACTGAAGCCAACTTCTGGTTCTCAGATATTTCAGCCTCCCTCCAACACTAAGATTGATGCCAGTAAATGGGAGCAATCTATTCTCATGAATGTTGGCCCTTGCATGCAGCATCCACCTCACGGTGCCCAATTAACACCTTTTGTTCATCAAATAACCTCAAACAAAATGAGGGATACCAATGCCGGTCCTTCATTTATCTCTCAGTCAGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGCATTTTGAGTTCTATAAACACAACCAATGCTGCCACTGAGAAAACTTCATCTGCAGTGCTGCTTGGTGGCAGCCGACCGAAACCTATGACTAATATAGTAGACCCAGAATCTTCCACATCTCCAAGTTCACATGGGTTAACATCTTCCAGCTGTCAGATGACTATTTTTTATGGTGGTCAAGCTCATGTGTTTGATGATGTCCAGCCTAATAAGGCAGATGTTATTATGGCTTTAGCTGGGTCAAATGGTGGATCTTGGTCCACAACATTCTCACCCAAATCTGCTGTAAAGCTATTTCATGATAGTAACTTTCTAATTGGAGAAAATGAAACAGTTATAGCTAGTAACGTGGCACCCCCACAAGATCTTCATGGGAGATTGTCTATGACCACCAGTTCTAGACATGCCATTCGACCAGGTGATCGAGTAACTACTCCAACAGGGGCACATCAGGGAAACATTTTAGCTAAAGAGATTAGAAATCCGGTGCAAGCAACAAATCCCAGCTCTGAAGACAAAAGAGCACAATGA 1284 0.4517 MALLRMAQLNNANNNNNSGIQQQIVNPVFHDFLGMKKNPNDSNVLLAPKTTHLHVRPPSPSSTTVSRGGGPFSTTSDIGSERQVGNHLEGVPFYGPRSDFSGAEIGNRLVGNKRSNSDSTFMGSSRDAFQMGPDSLQNSHLMKILRNAAGGERLRRSNDDEVFLGIQSLKPTSGSQIFQPPSNTKIDASKWEQSILMNVGPCMQHPPHGAQLTPFVHQITSNKMRDTNAGPSFISQSAADEGSRTGIKGPGILSSINTTNAATEKTSSAVLLGGSRPKPMTNIVDPESSTSPSSHGLTSSSCQMTIFYGGQAHVFDDVQPNKADVIMALAGSNGGSWSTTFSPKSAVKLFHDSNFLIGENETVIASNVAPPQDLHGRLSMTTSSRHAIRPGDRVTTPTGAHQGNILAKEIRNPVQATNPSSEDKRAQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1966g00020 427 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 100 370 IPR040390 -
Gabi1966g00020 427 MobiDBLite consensus disorder prediction 282 297 - -
Gabi1966g00020 427 MobiDBLite consensus disorder prediction 411 427 - -
Gabi1966g00020 427 MobiDBLite consensus disorder prediction 52 80 - -
Gabi1966g00020 427 MobiDBLite consensus disorder prediction 55 80 - -
Gabi1966g00020 427 Pfam tify domain 300 331 IPR010399 -
Gabi1966g00020 427 MobiDBLite consensus disorder prediction 383 427 - -
Gabi1966g00020 427 ProSiteProfiles Tify domain profile. 297 332 IPR010399 -
Gabi1966g00020 427 SMART tify_2 297 332 IPR010399 -
Gabi1966g00020 427 MobiDBLite consensus disorder prediction 267 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1966g00020 Gabi-Chr1966 240547 251409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1966g00020 28 330 Tify Gene Family AT4G32570 40.063 4.03e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi1966g00020 tify 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1966g00020 - - gmx:100807222 551.206