Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1966g00017 ATGAATAAGGAGAATGCTATGGTTGGTGGTGGTGCTGTCAGGGTCACTCGAGCAAGGACTAGAGCCTTTAGGGGTGTATCTGTCTCCTCAAGACCCTCAGTACTATGCACCAAAAGAGCAGCTTCTGATGACATTAAATCTCCTGTTGTGTCTTCTACCTCTGCTGATAAGAGCATGGAAGTGTTAACAAATGTTACAAACATATGCAGAAAATCACATGATAAGTGTATTAAGGCACCAAAATTTCAGAGAAGAGGAGGTTATAAGAAGAGAAACACAAAGGTAGCTTCAGGTGTCTCCATTCAAGTTCTGTCAACCAAAGTGGATGTTAGAGCAAAGTTAGATAATGATTTGTCCACAATAAAGATGGATGAGTCACATGACACCATTGTCACGGAAAGGCTAGAAGAGAGAGAGACACTGCAACCTTGTATGTCCAATAGCATGAGAGAAAGTGTTATGGCAGATCCCTTCCTTTCAATGCAGGAGACTCTGATGTCTGATGAACTTCTAAGCTCTCCAAATAAAGACAAAGACATGATTTGTGATAAACTAAGAGCCTCAGAAGTCTTTGGCATTATGGACATTGATTCAGAGTTAAAGGATTCTCAAGTTTGGAGTTCATATGCCCCAGATATATACAATTATATATGTGTGAGAGAGCGTGAAAGGAGACCGTTAACCAATTACATGGACAAGTTGCAGCAAGATATCACTCCGAGCATGCGGGGAATTCTGGTTGATTGGCTTGTGGAGATTTCTGAGGAATATAAGCTAGTTCCAGACACTCTTTACCTAACAGTGAATCTCATTGATCGTTTTCTTTCTAGAAGTTTGATTCACAAACAAAGGCTCCAGTTGCTTGGTGTCACTTGCATGCTGATTTCATCAAAGTATGAAGAGATTCGTGCTCCTCAAGTGGAAAAATTTTGCTTCATCACTGATAATACATACAAGAAAGCAGAGGTATTGGAAATGGAGAAAGAAGTTCTAAATCTTTTGCATTTTCAATTATCTGTTCCCACAACCAAAACATTTCTCAGGAGGTTCATCCAAGCAGCACAATCTTCTGATTCTTCCTACAAGGTTCCTTGTGTTGAACTGGAATTCCTTGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTGATAGCTGCATCTGCTGTATTACTTGCTAGATGGACCCTCAACCACTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAATTACAAAGTGTCAGAGCTCAAAACTACTGTCCTTGCACTTGCAGATTTGCAACTTAATACCAAAGGCTGTTGTCTGAATGCTATTCCTGAAAAATATAAACAAGAGAAGTTCAAGAATGTGGCATATTTGTCTCCAAAACCGGTGCAGTCACTTTTTGAGGTTCAAGTGTAA 1434 0.3996 MNKENAMVGGGAVRVTRARTRAFRGVSVSSRPSVLCTKRAASDDIKSPVVSSTSADKSMEVLTNVTNICRKSHDKCIKAPKFQRRGGYKKRNTKVASGVSIQVLSTKVDVRAKLDNDLSTIKMDESHDTIVTERLEERETLQPCMSNSMRESVMADPFLSMQETLMSDELLSSPNKDKDMICDKLRASEVFGIMDIDSELKDSQVWSSYAPDIYNYICVRERERRPLTNYMDKLQQDITPSMRGILVDWLVEISEEYKLVPDTLYLTVNLIDRFLSRSLIHKQRLQLLGVTCMLISSKYEEIRAPQVEKFCFITDNTYKKAEVLEMEKEVLNLLHFQLSVPTTKTFLRRFIQAAQSSDSSYKVPCVELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLNHSEHPWNPTLEHYTNYKVSELKTTVLALADLQLNTKGCCLNAIPEKYKQEKFKNVAYLSPKPVQSLFEVQV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1966g00017 477 Gene3D - 226 339 - -
Gabi1966g00017 477 CDD CYCLIN_AtCycA-like_rpt2 341 458 - -
Gabi1966g00017 477 PANTHER CYCLINS 177 431 IPR039361 -
Gabi1966g00017 477 SMART Cyclin_C_2 341 467 IPR004367 -
Gabi1966g00017 477 Pfam Cyclin, N-terminal domain 212 339 IPR006671 -
Gabi1966g00017 477 Gene3D - 212 462 - -
Gabi1966g00017 477 SUPERFAMILY Cyclin-like 340 466 IPR036915 -
Gabi1966g00017 477 Pfam Cyclin, C-terminal domain 341 466 IPR004367 -
Gabi1966g00017 477 FunFam Mitotic cyclin 6 226 326 - -
Gabi1966g00017 477 FunFam Cyclin A1 328 463 - -
Gabi1966g00017 477 ProSitePatterns Cyclins signature. 243 274 IPR006671 -
Gabi1966g00017 477 SUPERFAMILY Cyclin-like 202 338 IPR036915 -
Gabi1966g00017 477 PIRSF Cyclin_A_B_D_E 5 475 IPR046965 GO:0016538|GO:0044772
Gabi1966g00017 477 SMART cyclin_7 345 436 IPR013763 -
Gabi1966g00017 477 SMART cyclin_7 248 332 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1966g00017 Gabi-Chr1966 197646 202083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1966g00017 13 473 Core Cell Cycle Gene Families AT5G25380 50.209 2.33e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1966g00017 K06627 - gmx:100777132 603.208