Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1966g00014 ATGGACGTTCTCTCACTAGTACTGTATCTTGAAGGTCCAAAAGACACTTACCCGTTGTTGATGGAGCGGCCAGGGAGCTTCAATGGCAGTCAGCATATCATAGAAATAGCTGGGAGTACTGATGCTTCCACGCCTGCCTCGCCGCATGATAGACATTTTAATGGTGTAGATGCATCGCAGCATGAAGACAGAATTAGTAGTGCAAGAATACCTGTTTCCACCTCGAGTATATCTAATGGATCAAATACTAGGAATTCTTCGTTCATCAGACGAGGGGATACTCGTCGGAATAGGAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAGCTAGTTCTCTTAGTAAGCCAGATTGTTGCATCTATAGTTGTTTTGTCTTTGTCAAGGCATGAGCATCCACGTGCCCCATTGTTTCATTGGATTGTGGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCAATCGCGTCAAACATCTCCTCGGGTTAATGATCCTTCCGGGACACTTCTTTCCAGTTCCAGAACTAATGGAGTTGAAGTTGGTCAGGCTGCTGCTCCATCCTCCAGAAGCATTCAAGCTTCAGTATTGATGAATAGAAGAATGAAGACACTAGTGGAGTACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTGGGAAATGTATGGATCTTTGGGGGACATTCGACTGTTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTGTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCAGACACAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGTGAAAGCAATTCAGCTGCTGCCGAAGGTGGAATTGTGGCCGCAGGAACTGAAAAAGAGCGTGTGATCTCCGGGGAAGATGCGGTTTGCTGCATCTGTCTGGCAAAGTATGAAAATAATGATGAGCTAAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTAGATAAGTGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTGACAGGATCCATCTCTGGAGAAGATGCCAGCCAACAACGAGGTGACATCAGGGTTGGGAACGGCCTCACCAATACCACAGTTTAG 1299 0.4365 MDVLSLVLYLEGPKDTYPLLMERPGSFNGSQHIIEIAGSTDASTPASPHDRHFNGVDASQHEDRISSARIPVSTSSISNGSNTRNSSFIRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRAPLFHWIVGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRVNDPSGTLLSSSRTNGVEVGQAAAPSSRSIQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSTVDEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDQTQNRGATSESINALPTYKFKMKKNKRSGESNSAAAEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKSEVGENLTGSISGEDASQQRGDIRVGNGLTNTTV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1966g00014 432 ProSiteProfiles Zinc finger RING-type profile. 357 398 IPR001841 -
Gabi1966g00014 432 MobiDBLite consensus disorder prediction 408 432 - -
Gabi1966g00014 432 SUPERFAMILY RING/U-box 349 404 - -
Gabi1966g00014 432 SMART ring_2 357 397 IPR001841 -
Gabi1966g00014 432 MobiDBLite consensus disorder prediction 66 88 - -
Gabi1966g00014 432 MobiDBLite consensus disorder prediction 170 201 - -
Gabi1966g00014 432 CDD RING-H2_EL5-like 357 397 - -
Gabi1966g00014 432 MobiDBLite consensus disorder prediction 167 201 - -
Gabi1966g00014 432 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 401 - -
Gabi1966g00014 432 MobiDBLite consensus disorder prediction 40 97 - -
Gabi1966g00014 432 SMART ringv_2 356 398 IPR011016 GO:0008270
Gabi1966g00014 432 Pfam Ring finger domain 357 398 IPR001841 -
Gabi1966g00014 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 406 IPR013083 -
Gabi1966g00014 432 FunFam E3 ubiquitin-protein ligase 340 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1966g00014 Gabi-Chr1966 172170 178391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1966g00014 90 408 C3H Transcription Factor Family AT1G80400 58.282 2.63e-138 400