Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1966g00006 ATGGGAATTGGAAAGAAAGAAGATGAAAGGATTGAAAGAATAATTCGGGGTCTTTTAAAACTTCCCGAAAATCGAAGATGCATCAACTGCAATATCTTGGGACCACAGTATGTATGTACAACTTTCTCAACATTTGTCTGCACAAATTGCAGTGGCATACATCGAGAGTTTACACATAGAGTAAAATCTGTATCAATGGCTAAATTTACTCAAGAAGAAGTCACTGCTCTTCAAGCAGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGAATGGGATCCTCTGCGTAATTCTTATCCTGATTCATGTAACATGCACAGACTTAGAGATTTTATCAAGAATGTCTATGTGGACAGAAAATTCACTGGTGAAAGGAGTTGTAGCAATCTTCCCAGGATTAGATTGAATGACAAGGAGGATTTCAGTGAAAGTAGGAAGAGTAACTCACTTCGTTTTGATTTCAAAAGTCCTCATTCAAGCCCTGGTCCAAGAAGTGATGACAAGAGTTTCAGATATTTATATGATGAAAGCAGAAGTCCTAAATATGTGCAAAAATATTCAAGGCTTGGTGGCCAAAGCAAAAGTCCTATAAAATTTGAGGTTGTTGATGATAGGTTTCGAGATGACGACTTTAGAAATCGGAGGCTGTCAAATTTAGAATCAAAGCTAAGACATCTTTCACTTGATGGTCAGAAGAATGTGGACAGATCCCAACCCCATGTTGCTAAGACATCTTTTAGAGAAGTATTCCTCTCTATTTCCATCATGCTTAATTTAAAGGTCACACCTTCTGGTGGAGAGGGTTCTGTTGAGGAAAATCCATCTGAACAAAAAATTAGTAATCCAGAAAGCTTTGTTGATTTGAGTGCCAAGTCTCAGGCTTCTGATTCTACTGCTGGAGTTGGACCAGAATCACCGGGTATATCACAATCAACTGAAAGTAACTGGGCCTCATTTGCAGCTTCTTCAGAGGCCAATGTTCCTAAAACTCCAAACACAAATACCTTGACATCTTCTACAATAGAGGCGAAACCTGAAGCAAAATTTGCAAATCCTTTAGATCTTTTACTTTTTGAATTGTCAGGCCCTTTGACTCAAATGACTAGTGGCGTATCAGAAGTCACTAGTGGTGGTGATAATGATACAACAACTACAACAGTAGAAAATACCTCTACTTGGGATTTTCCACCTACTTCAATTGGGCAAACAACTGCATCTCCCAACAATACTGATGTTTGGTCAATTACATCAACAACTGCCACTGAGCTGGCACAATCTTCTAATGCAATTTCACCACATGCTGAGCTATATGAAGCAGAAGGCTCCATTGACGTTTCACATGCACATAAACCATCAAGCATGCAATATCTTCCTTCTGTATCAGAAGGTTGTAGTTCAACCACACAACCATCAAATACACCAGTCAAACCTGTAGCTTCAAATAATCAGCCATCAGTTGCTCCTGATACACATGACTCTTCAAGTGCTTTTACTGAACTATCTTCTCAAACCACCTCAAAACCTACTGAAGACACCAGACCTGATGTTAGCTCCCAACCTAGTAAAGTGGAAACCAGGTCAAGTGGAAGAAAGGAACTTCCAGAGGACCTTTTTACTTCTAGATACATATGTAGCCCTGCACCACATGCAGGTTGGCAGAATGTTCAACATCATGGTATGGGATATGGCATGCAGTATCCTAATGCAGTGCCTCCCTCAGCATTCCCTATTGTACCTAAGTCCACAAATCCATTTGAAGTAACTGAGGGGAGAACTATAATACATGCCTCATCGTTTCCTACCATGGCACCTTTGCTCGGTGAACTGCTGCCTCCTGTATCAACCAGAACAGGACTAATGCATGCTTCAAGCCTTGGGTCTTTAGATGCAATGGTGCCTCAGTCCTCAAGTTATGGATCCCCAGTTCCCTCAGGTGTGTACTTTGATCAAGTTAATAATGAGGAGCAACATACTAGATCACAAAGTGTTGACAACTTCAATAGTGACAAAACTGGCTTTGGATCTCTAGACACCATTCAACAGTCCAATGGGGGATATGTGACACCCAGAACTCCAAATTCTTTTTCAAATACAAGAAGAAACCCATTTGATTAG 2118 0.4027 MGIGKKEDERIERIIRGLLKLPENRRCINCNILGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTQEEVTALQAGGNERAKQIYFKEWDPLRNSYPDSCNMHRLRDFIKNVYVDRKFTGERSCSNLPRIRLNDKEDFSESRKSNSLRFDFKSPHSSPGPRSDDKSFRYLYDESRSPKYVQKYSRLGGQSKSPIKFEVVDDRFRDDDFRNRRLSNLESKLRHLSLDGQKNVDRSQPHVAKTSFREVFLSISIMLNLKVTPSGGEGSVEENPSEQKISNPESFVDLSAKSQASDSTAGVGPESPGISQSTESNWASFAASSEANVPKTPNTNTLTSSTIEAKPEAKFANPLDLLLFELSGPLTQMTSGVSEVTSGGDNDTTTTTVENTSTWDFPPTSIGQTTASPNNTDVWSITSTTATELAQSSNAISPHAELYEAEGSIDVSHAHKPSSMQYLPSVSEGCSSTTQPSNTPVKPVASNNQPSVAPDTHDSSSAFTELSSQTTSKPTEDTRPDVSSQPSKVETRSSGRKELPEDLFTSRYICSPAPHAGWQNVQHHGMGYGMQYPNAVPPSAFPIVPKSTNPFEVTEGRTIIHASSFPTMAPLLGELLPPVSTRTGLMHASSLGSLDAMVPQSSSYGSPVPSGVYFDQVNNEEQHTRSQSVDNFNSDKTGFGSLDTIQQSNGGYVTPRTPNSFSNTRRNPFD 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1966g00006 705 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gabi1966g00006 705 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gabi1966g00006 705 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gabi1966g00006 705 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Gabi1966g00006 705 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Gabi1966g00006 705 MobiDBLite consensus disorder prediction 655 705 - -
Gabi1966g00006 705 SMART arf_gap_3 8 130 IPR001164 GO:0005096
Gabi1966g00006 705 MobiDBLite consensus disorder prediction 290 341 - -
Gabi1966g00006 705 PANTHER ARFGAP/RECO-RELATED 4 704 IPR044820 GO:0005096
Gabi1966g00006 705 Gene3D Arf GTPase activating protein 3 131 IPR038508 -
Gabi1966g00006 705 MobiDBLite consensus disorder prediction 454 525 - -
Gabi1966g00006 705 MobiDBLite consensus disorder prediction 454 535 - -
Gabi1966g00006 705 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Gabi1966g00006 705 CDD ArfGap_AGFG 12 122 - -
Gabi1966g00006 705 MobiDBLite consensus disorder prediction 370 411 - -
Gabi1966g00006 705 FunFam Arf-GAP domain and FG repeat-containing protein 1 2 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1966g00006 Gabi-Chr1966 67959 73162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1966g00006 12 122 C2H2 Transcription Factor Family AT4G05330 32.520 4.31e-12 66.2