Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1964g00027 ATGGATTTCTGGCCAGAATTTCTTGCAAGCACTTCGGGAAGAGAGTTTGTAGCAGGAGGATTTGGAGGCATTGCTGGTGTAATCTCTGGTTATCCACTAGACACCCTTCGCATCAGACAACAGAGCTCAAATGCTGGCTCTGCATTCAGCATCCTTAGACATATGGTTTCTAGGGAAGGACCAGCTTCTCTATACCGTGGCATGTGCTTACCATTGGTTTCCGTTACTTTTCAGAACGCTTTAGTTTTCCAAACTTACGCAGTTCTCTCAAGGGCATTTGACTCGTCTGTTTCTGCTAAAGACCCTCCTTCCTACAAGAGTGTTGCTCTAGGAGGAGTTGGTACCGGTGCTCTACAAAGTCTATTGCTTTCCCCTGTAGAGTTGGTTAAAATTCGACTTCAACTGCAGAACACAGGCAAGTTGACAGAACCCCAAAAAGGTCCTGCAAGTGTTGTTAAGAGTATATGGAAAAAAGAGGGCCTTCGAGGCGTGTATCGAGGACTTGGCATCACTATGATGAGGGATATACCTTCTCATGGTTTCTACTTCTGGACATATGAATACATGAGGGAACAGTTTCACCCGGGTTGCAGAAAAAGTGGTCAAGAAAGTTTGAATACTATGCTAATAGCTGGAGGATTAGCTGGGGTAGCTAGCTGGATTTGTTGCTACCCTTTTGATGTTATAAAAACAAGATTACAGGCTCAAACACTCTCTTCTCTAAAATATTCTGGTATTTTTGATTGCTTCAAAAAGAGCATTAAAGAAGAAGGATACGTTGTGCTATGGAGGGGTTTAGGAACTGCAGTTGCCAGAGCGTTCCTAGTGAATGGTGCCATATTTTCTGCTTATGAGATTACACTAAGGTTACTGTTTAACAATGGAAGTATCCAAATGAAGGAAACAATTTAG 912 0.4265 MDFWPEFLASTSGREFVAGGFGGIAGVISGYPLDTLRIRQQSSNAGSAFSILRHMVSREGPASLYRGMCLPLVSVTFQNALVFQTYAVLSRAFDSSVSAKDPPSYKSVALGGVGTGALQSLLLSPVELVKIRLQLQNTGKLTEPQKGPASVVKSIWKKEGLRGVYRGLGITMMRDIPSHGFYFWTYEYMREQFHPGCRKSGQESLNTMLIAGGLAGVASWICCYPFDVIKTRLQAQTLSSLKYSGIFDCFKKSIKEEGYVVLWRGLGTAVARAFLVNGAIFSAYEITLRLLFNNGSIQMKETI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1964g00027 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Gabi1964g00027 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Gabi1964g00027 303 Pfam Mitochondrial carrier protein 13 93 IPR018108 -
Gabi1964g00027 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Gabi1964g00027 303 Pfam Mitochondrial carrier protein 109 193 IPR018108 -
Gabi1964g00027 303 Gene3D Mitochondrial carrier domain 9 300 IPR023395 -
Gabi1964g00027 303 FunFam Mitochondrial arginine transporter BAC2 11 301 - -
Gabi1964g00027 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Gabi1964g00027 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Gabi1964g00027 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Gabi1964g00027 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Gabi1964g00027 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Gabi1964g00027 303 SUPERFAMILY Mitochondrial carrier 14 285 IPR023395 -
Gabi1964g00027 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 11 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1964g00027 Gabi-Chr1964 202444 205128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1964g00027 1 294 Antiporters AT1G79900 70.169 6.90e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1964g00027 K15109 - gmx:100812056 516.924