Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1964g00002 ATGGATGTTAGTAATCCGGAACGAAATAGCAACACCCAAACCGATCAATATCCTTTGCTGATGGAGCAGCTGGAAACCCACAATGTTCATCAGCACATAATTGATATTACAAGGAACACTGAAGCTTTATCCAGCTCATCTCATAATGATCAACATCCTGAAATACATCTACCCCAGAATGAAGATCAACTGACTGGCAGCACAGTAGTCCCCACTCATCAAATATCTTCATTTTCTGCTTCCAGATATAATTCTAGAAATTCCTCGTCGACCAGAAGAGGTGAGGGATATGGTCATCGCAGAAGGAGCCCACTAAATTCTGGACTATGGATTTCTGTTGAGCTTCTTGTCACTTTGAGTCAGATCATAGCTTCTATTGTAGTATTGTCACTATCCAGAAATGAAAATCCCCAAGCACCATTATTTGCGTGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCTATTCTTTACTGGAGGTATCGAAACCATAATCAAAGTACTGAACAAGATACTTCTCAACCATCTCAAGGATCCTCTGGAAGCGACCCTGCAGAACCCACTTCATATACTGCCATCTCTGTTGCTCATGTTACAGATGAAGACAATAGTCAAGCTACAGAATCAGCCATGAGAAGTGCCAGAATTCCTGGAGCCTTTAGTTCTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTTGTAGGCAACGTATGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCGAAATTGTATAGGCTATGTATAGTGTTTCTTACCTTTAGCTGCATTGGATATGCCATGCCATTTATACTCTGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGCATACGGGAGGATTTTTCTCAAAACAGGGGAGCCTCAGTAGAATCTATTAATGCTCTACCAATCTACAAGTTCAGATTGAAGGAAAATGAAAATGGTGGTGTTCAGGATGTCAACACAGCTGTAGATGAAGGTGGAGTCCTGGCTGCCGGGACAGAGAAGGAACGCGTGATATCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGTAGATGATGATGAGCTTCGGGAGTTACCCTGCTTTCATGTCTTTCACGTAGAGTGTATTGACAAATGGTTGAAGATAAATGCTTCCTGTCCTCTTTGTAAAAATGAAGTTGGTACAAGTGGTGGAGTGTCACCTTCAGCCACTGGCTCCACTCAGCCTTAG 1281 0.4231 MDVSNPERNSNTQTDQYPLLMEQLETHNVHQHIIDITRNTEALSSSSHNDQHPEIHLPQNEDQLTGSTVVPTHQISSFSASRYNSRNSSSTRRGEGYGHRRRSPLNSGLWISVELLVTLSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRYRNHNQSTEQDTSQPSQGSSGSDPAEPTSYTAISVAHVTDEDNSQATESAMRSARIPGAFSSRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGASVESINALPIYKFRLKENENGGVQDVNTAVDEGGVLAAGTEKERVISGEDAVCCICLAKYVDDDELRELPCFHVFHVECIDKWLKINASCPLCKNEVGTSGGVSPSATGSTQP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1964g00002 426 FunFam E3 ubiquitin-protein ligase 349 416 - -
Gabi1964g00002 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 410 - -
Gabi1964g00002 426 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Gabi1964g00002 426 CDD RING-H2_RNF6-like 366 407 - -
Gabi1964g00002 426 SMART ring_2 366 406 IPR001841 -
Gabi1964g00002 426 Pfam Ring finger domain 366 407 IPR001841 -
Gabi1964g00002 426 SUPERFAMILY RING/U-box 358 413 - -
Gabi1964g00002 426 MobiDBLite consensus disorder prediction 76 92 - -
Gabi1964g00002 426 MobiDBLite consensus disorder prediction 169 189 - -
Gabi1964g00002 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 414 IPR013083 -
Gabi1964g00002 426 MobiDBLite consensus disorder prediction 76 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1964g00002 Gabi-Chr1964 26709 31982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1964g00002 1 417 C3H Transcription Factor Family AT1G80400 58.156 2.12e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1964g00002 - - gmx:100819729 684.485