Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00018 ATGGGTGGTGGTGGAACACTCGTGGAAGGGATTCGTCGCTTGTTTCAAAGACGCGCTTCTGCTACTAAGGACGACCATATCCACAACAACAATGCCAATAATAGCCGCGTCTCTGTGAGAGATTTACGCGCACAATTGGCCTCTATTCCCAATCACGATCACCAAACACCCATTCACCAACACTTTGATATCTCTCCCTTGAAGCCCATCAAAGTCCCTACACTTACCCTCTTCAAACCTCCTTCTTCCATGGATCCTCACAAAAAGGGTGAGTCAGAGTTTTTTACTGAGTATGGAGAGGCTAGTCAATACCAGATCCAAGAAGTTGTTGGAAAAGGAAGTTACGGTGTTGTGGGTTCTGCCATTGACACTCATACTGGTGAAAAGGTTGCAATCAAGAAAATTAATGATGTTTTTGAACATGTATCAGATGCCACACGGATCCTAAGAGAAATTAAACTCTTGCGGTTGCTCCGACATCCTGATATTGTAGAAATTAAGCATATTATGCTTCCTCCTTCACGGCGAGAGTTCAAGGATATCTATGTTGTGTTTGAGTTGATGGAATCTGACCTCCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACCACCAATTTTTCTTGTATCAACTTCTTCGGGGCCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTTGCTAACGCTGATTGCAAACTAAAGATATGTGATTTTGGGCTTGCTCGAGTTTCATTCAATGATGCTCCATCAGCTATATTCTGGACTGACTATGTTGCAACTCGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTTTCAAAATATACCCCCGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCGTTGTTTCCCGGAAAAAATGTGGTGCATCAATTGGATCTCATGACTGAATTGCTTGGTACTCCTCCTCCCGAGTCCATTGCAAGGATTCGAAATGAGAAAGCTAGAAGGTACCTAAGTAGCATGCGAAAAAAGCAACCAGTTCCATTCTCCCAAAAATTTCCAAATGCAGATCCGTTGGCTCTTCATTTACTGGAGCGCCTACTTGCATTTGATCCTAAAGACCGTCCAACAGCTGAAGAGGCATTAGCTGATCCTTACTTCCATGGTTTGTCAAACATGGATCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAGATGCTCCAGGAATATCTTCGTGGTGGAGATCAAACCAGCTTCATGTACCCAAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTCGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGCAGAGACAGCATGCCTCCTTACCTAGAGAGCGAGTTTGCGCTTCCAAGGATGAAAATAATCAAAATAACGATCCTGAAAGGCCAACTGTATTAAATCTTTCAAGTCCTCCGGGTTCTGATGGGACAGATGCTGGAAACTCAGATGTTCAAAATGGACCCTCCAAGCCAAACTACAGCGCGCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAATGTATTGGTGTGAAACAAAGTAAAGATCCAGAGGAGCCAATTACTGAGGTCAATGAAGAGACAGTGGATGGATTGACACAGAAGGTTGCTTCCCTCCATGCTTAG 1776 0.4319 MGGGGTLVEGIRRLFQRRASATKDDHIHNNNANNSRVSVRDLRAQLASIPNHDHQTPIHQHFDISPLKPIKVPTLTLFKPPSSMDPHKKGESEFFTEYGEASQYQIQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTELLGTPPPESIARIRNEKARRYLSSMRKKQPVPFSQKFPNADPLALHLLERLLAFDPKDRPTAEEALADPYFHGLSNMDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCASKDENNQNNDPERPTVLNLSSPPGSDGTDAGNSDVQNGPSKPNYSARSLLKSASISASKCIGVKQSKDPEEPITEVNEETVDGLTQKVASLHA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00018 591 MobiDBLite consensus disorder prediction 475 547 - -
Gabi1963g00018 591 ProSitePatterns Protein kinases ATP-binding region signature. 110 134 IPR017441 GO:0005524
Gabi1963g00018 591 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 103 448 - -
Gabi1963g00018 591 FunFam Mitogen-activated protein kinase 419 441 - -
Gabi1963g00018 591 FunFam Mitogen-activated protein kinase 190 418 - -
Gabi1963g00018 591 MobiDBLite consensus disorder prediction 508 547 - -
Gabi1963g00018 591 FunFam Mitogen-activated protein kinase 93 198 - -
Gabi1963g00018 591 Gene3D Transferase(Phosphotransferase) domain 1 190 418 - -
Gabi1963g00018 591 CDD STKc_TDY_MAPK 103 440 - -
Gabi1963g00018 591 ProSiteProfiles Protein kinase domain profile. 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00018 591 ProSitePatterns MAP kinase signature. 139 242 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gabi1963g00018 591 Gene3D Phosphorylase Kinase; domain 1 120 441 - -
Gabi1963g00018 591 Pfam Protein kinase domain 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00018 591 SUPERFAMILY Protein kinase-like (PK-like) 100 400 IPR011009 -
Gabi1963g00018 591 SMART serkin_6 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00018 591 MobiDBLite consensus disorder prediction 493 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00018 Gabi-Chr1963 149976 155086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00018 1 590 MAP Kinase Gene Family AT1G73670 72.148 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gabi1963g00018 Pkinase 6.2e-68 CL0016