Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00016 ATGGGTGGTGGTGGAACACTCGTGGAAGGGATTCGTCGCTTGTTTCAAAGACGCGCTTCTGCTACTAAGGACGACCATATCCACAACAACAATGCCAATAATAGCCGCGTCTCTGTGAGAGATTTACGCGCACAATTGGCCTCTATTCCCAATCACGATCACCAAACACCCATTCACCAACACTTTGATATCTCTCCCTTGAAGCCCATCAAAGTCCCTACACTTACCCTCTTCAAACCTCCTTCTTCCATGGATCCTCACAAAAAGGGTGAGTCAGAGTTTTTTACTGAGTATGGAGAGGCTAGTCAATACCAGATCCAAGAAGTTGTTGGAAAAGGAAGTTACGGTGTTGTGGGTTCTGCCATTGACACTCATACTGGTGAAAAGGTTGCAATCAAGAAAATTAATGATGTTTTTGAACATGTATCAGATGCCACACGGATCCTAAGAGAAATTAAACTCTTGCGGTTGCTCCGACATCCTGATATTGTAGAAATTAAGCATATTATGCTTCCTCCTTCACGGCGAGAGTTCAAGGATATCTATGTTGTGTTTGAGTTGATGGAATCTGACCTCCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACCACCAATTTTTCTTGTATCAACTTCTTCGGGGCCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTTGCTAACGCTGATTGCAAACTAAAGATATGTGATTTTGGGCTTGCTCGAGTTTCATTCAATGATGCTCCATCAGCTATATTCTGGACTGACTATGTTGCAACTCGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTTTCAAAATATACCCCCGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCGTTGTTTCCCGGAAAAAATGTGGTGCATCAATTGGATCTCATGACTGAATTGCTTGGTACTCCTCCTCCCGAGTCCATTGCAAGGATTCGAAATGAGAAAGCTAGAAGGTACCTAAGTAGCATGCGAAAAAAGCAACCAGTTCCATTCTCCCAAAAATTTCCAAATGCAGATCCGTTGGCTCTTCATTTACTGGAGCGCCTACTTGCATTTGATCCTAAAGACCGTCCAACAGCTGAAGAGGCATTAGCTGATCCTTACTTCCATGGTTTGTCAAACATGGATCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAGATGCTCCAGGAATATCTTCGTGGTGGAGATCAAACCAGCTTCATGTACCCAAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTCGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGCAGAGACAGCATGCCTCCTTACCTAGAGAGCGAGTTTGCGCTTCCAAGGATGAAAATAATCAAAATAACGATCCTGAAAGGCCAACTGTATTAAATCTTTCAAGTCCTCCGGGTTCTGATGGGACAGATGCTGGAAACTCAGATGTTCAAAATGGACCCTCCAAGCCAAACTACAGCGCGCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAATGTATTGGTGTGAAACAAAGTAAAGATCCAGAGGAAAAAGATGCAGTTCGTTGTTGTTTTGGTCTGTCTGGCTTATTTCATGTTGTGAGGAGCCAATTACTGAGGTCAATGAAGAGACAGTGGATGGATTGA 1803 0.4293 MGGGGTLVEGIRRLFQRRASATKDDHIHNNNANNSRVSVRDLRAQLASIPNHDHQTPIHQHFDISPLKPIKVPTLTLFKPPSSMDPHKKGESEFFTEYGEASQYQIQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTELLGTPPPESIARIRNEKARRYLSSMRKKQPVPFSQKFPNADPLALHLLERLLAFDPKDRPTAEEALADPYFHGLSNMDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCASKDENNQNNDPERPTVLNLSSPPGSDGTDAGNSDVQNGPSKPNYSARSLLKSASISASKCIGVKQSKDPEEKDAVRCCFGLSGLFHVVRSQLLRSMKRQWMD 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00016 600 Gene3D Transferase(Phosphotransferase) domain 1 190 418 - -
Gabi1963g00016 600 ProSitePatterns Protein kinases ATP-binding region signature. 110 134 IPR017441 GO:0005524
Gabi1963g00016 600 Pfam Protein kinase domain 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00016 600 FunFam Mitogen-activated protein kinase 419 441 - -
Gabi1963g00016 600 FunFam Mitogen-activated protein kinase 190 418 - -
Gabi1963g00016 600 FunFam Mitogen-activated protein kinase 93 198 - -
Gabi1963g00016 600 SUPERFAMILY Protein kinase-like (PK-like) 100 400 IPR011009 -
Gabi1963g00016 600 Gene3D Phosphorylase Kinase; domain 1 120 441 - -
Gabi1963g00016 600 CDD STKc_TDY_MAPK 103 440 - -
Gabi1963g00016 600 ProSiteProfiles Protein kinase domain profile. 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00016 600 ProSitePatterns MAP kinase signature. 139 242 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gabi1963g00016 600 MobiDBLite consensus disorder prediction 475 543 - -
Gabi1963g00016 600 SMART serkin_6 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00016 600 MobiDBLite consensus disorder prediction 508 543 - -
Gabi1963g00016 600 MobiDBLite consensus disorder prediction 493 507 - -
Gabi1963g00016 600 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 103 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00016 Gabi-Chr1963 149976 155086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00016 1 569 MAP Kinase Gene Family AT1G73670 72.870 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gabi1963g00016 Pkinase 6.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1963g00016 - - gmx:100780831 959.133