LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1963g00015	ATGGGTGGTGGTGGAACACTCGTGGAAGGGATTCGTCGCTTGTTTCAAAGACGCGCTTCTGCTACTAAGGACGACCATATCCACAACAACAATGCCAATAATAGCCGCGTCTCTGTGAGAGATTTACGCGCACAATTGGCCTCTATTCCCAATCACGATCACCAAACACCCATTCACCAACACTTTGATATCTCTCCCTTGAAGCCCATCAAAGTCCCTACACTTACCCTCTTCAAACCTCCTTCTTCCATGGATCCTCACAAAAAGGTTACTTTTGAGTCAGAGTTTTTTACTGAGTATGGAGAGGCTAGTCAATACCAGATCCAAGAAGTTGTTGGAAAAGGAAGTTACGGTGTTGTGGGTTCTGCCATTGACACTCATACTGGTGAAAAGGTTGCAATCAAGAAAATTAATGATGTTTTTGAACATGTATCAGATGCCACACGGATCCTAAGAGAAATTAAACTCTTGCGGTTGCTCCGACATCCTGATATTGTAGAAATTAAGCATATTATGCTTCCTCCTTCACGGCGAGAGTTCAAGGATATCTATGTTGTGTTTGAGTTGATGGAATCTGACCTCCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACCACCAATTTTTCTTGTATCAACTTCTTCGGGGCCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTTGCTAACGCTGATTGCAAACTAAAGATATGTGATTTTGGGCTTGCTCGAGTTTCATTCAATGATGCTCCATCAGCTATATTCTGGACTGACTATGTTGCAACTCGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTTTCAAAATATACCCCCGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCGTTGTTTCCCGGAAAAAATGTGGTGCATCAATTGGATCTCATGACTGAATTGCTTGGTACTCCTCCTCCCGAGTCCATTGCAAGGATTCGAAATGAGAAAGCTAGAAGGTACCTAAGTAGCATGCGAAAAAAGCAACCAGTTCCATTCTCCCAAAAATTTCCAAATGCAGATCCGTTGGCTCTTCATTTACTGGAGCGCCTACTTGCATTTGATCCTAAAGACCGTCCAACAGCTGAAGAGGCATTAGCTGATCCTTACTTCCATGGTTTGTCAAACATGGATCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAGATGCTCCAGGAATATCTTCGTGGTGGAGATCAAACCAGCTTCATGTACCCAAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTCGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGCAGAGACAGCATGCCTCCTTACCTAGAGAGCGAGTTTGCGCTTCCAAGGATGAAAATAATCAAAATAACGATCCTGAAAGGCCAACTGTATTAAATCTTTCAAGTCCTCCGGGTTCTGATGGGACAGATGCTGGAAACTCAGATGTTCAAAATGGACCCTCCAAGCCAAACTACAGCGCGCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAATGTATTGGTGTGAAACAAAGTAAAGATCCAGAGGTCAATGAAGAGACAGTGGATGGATTGACACAGAAGGTTGCTTCCCTCCATGCTTAG	1767	0.4301	MGGGGTLVEGIRRLFQRRASATKDDHIHNNNANNSRVSVRDLRAQLASIPNHDHQTPIHQHFDISPLKPIKVPTLTLFKPPSSMDPHKKVTFESEFFTEYGEASQYQIQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTELLGTPPPESIARIRNEKARRYLSSMRKKQPVPFSQKFPNADPLALHLLERLLAFDPKDRPTAEEALADPYFHGLSNMDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCASKDENNQNNDPERPTVLNLSSPPGSDGTDAGNSDVQNGPSKPNYSARSLLKSASISASKCIGVKQSKDPEVNEETVDGLTQKVASLHA	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1963g00015	588	SMART	serkin_6	106	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1963g00015	588	MobiDBLite	consensus disorder prediction	510	549	-	-
	Gabi1963g00015	588	Pfam	Protein kinase domain	106	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1963g00015	588	Gene3D	Phosphorylase Kinase; domain 1	122	443	-	-
	Gabi1963g00015	588	FunFam	Mitogen-activated protein kinase	421	443	-	-
	Gabi1963g00015	588	ProSitePatterns	MAP kinase signature.	141	244	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Gabi1963g00015	588	MobiDBLite	consensus disorder prediction	495	509	-	-
	Gabi1963g00015	588	FunFam	Mitogen-activated protein kinase	94	200	-	-
	Gabi1963g00015	588	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	105	450	-	-
	Gabi1963g00015	588	SUPERFAMILY	Protein kinase-like (PK-like)	101	402	IPR011009	-
	Gabi1963g00015	588	ProSiteProfiles	Protein kinase domain profile.	106	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1963g00015	588	ProSitePatterns	Protein kinases ATP-binding region signature.	112	136	IPR017441	GO:0005524
	Gabi1963g00015	588	Gene3D	Transferase(Phosphotransferase) domain 1	192	420	-	-
	Gabi1963g00015	588	CDD	STKc_TDY_MAPK	105	442	-	-
	Gabi1963g00015	588	MobiDBLite	consensus disorder prediction	564	588	-	-
	Gabi1963g00015	588	MobiDBLite	consensus disorder prediction	477	549	-	-
	Gabi1963g00015	588	FunFam	Mitogen-activated protein kinase	192	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1963g00015	Gabi-Chr1963	149976	155086	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1963g00015	90	588	MAP Kinase Gene Family	AT3G18040	83.235	0.0	847

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Gabi1963g00015		Pkinase	6.1e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1963g00015	-		-	gmx:100780831	975.311