Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00014 ATGGACCCAACTTCGATCCCTCCTCCTCCTCCTCCTCTGCCCACCACCATCACCACTGCCGTCCCCTTCACCCTCGAACCCAACAATCACGTACCCCCCGCCGCCAACGTCATCCCCATCCCTAACTCCAACCCAGCTGCTGCTGCTCCTCCTACTGCCAACCACAATCATCCCCCTTATGACGAGATGATATACACAGCAATTGGAGCGTTGAAGGAGAAGGACGGGTCGAGCAAGCGAGCAATAGGGAAGTACATAGAGCAAGTGTACAGAGACCTTCCACCGACTCACTCGGCCTTGTTGACTCACCACCTCAAGCGCTTGAAAACCACTGGTCTTCTCGTTATGGTCAAGAAATCTTACAAGCTCCCTCCCCCTAGATCTGATACTCATCCTCATCCTCATGCTGTTGCTGATGCTGATGCTGATGCTGATGCTTCACTTCCCCCTTCTACCACCGCCGCTCCTCTTCAAACCCCAAGGGGCCGCGGTAGGCCCCCCAAGCTCAAGCCCCAGCACCAGCCCCAATCCTTTGTGCCGCAGAATGCTGAGCCCGTCTGGGTCGCGCTTGGGCTTGCGGATGAGCCTTCAACTGAAATCATGAAAAGAGGCCCGGGACGTCCTCGAAAGATTGGCGTGGGCCCCGCGGTTCCAGTCAGAAGAGGCCGCCCACCTGGGACGGGGAGATCTAGGTTGCCGAAGAGGCCCGGCCGTCCTCCTAAGCCCAAATCCGTGTCGACAATCTCGAATGGGCTCAAGCGACGCCCGGGCCGCCCACCCAAAATTCAATCGATACCAACCGTTATACCGTTCGCCGCCCCTGCTCCTGACGTGCCCGCGGAAACATTACCGCCAACTGGTCCGACTGCTTCTGTATCCATTTGGTCACCGAGGCCCAGAGGGCGTCCCAGGAAGATTGCCGCTGCAGTTCCTGGTGTGGGAGTTCCGCCACCCCCTGTGATTGGTGGTGTCGCCCGTGGTCGTGGTCGCCGAAGGGGAAGCGGGGTGGTCTTGCCCGTGATGAGGCAGGGTCGTCCTCCGAAGCTTGCCGTCGTTGGGAGGCCCAAGAGGCCCGTGGGCCGCCCAAAGGGAGCAACGGCTGCTACTTCAGCGCAAAAGGTTGCTAATGAAGATCTAAGTAGGAAACTTAATTACTTTCAATCAAAAGTGAAGGAATCTCTTGGTATGCTGAAGCCTTATTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATGCAAGAGTTGGAAATACTGGCAAATTTGGACCTTAAAGCATCATCAAGGGATGAAACACAACAACTGCAGCAACCACAACCGCTACCGCTACAGCTACCGCCACAGCAACAGCCGCTGCCTCAGCAACTGCCACAGGCACAGATTTATCAACAGCAATATCCCCAGATACTGCCTCAGCCACAGCTGCAGCAACTTTTTCAACCACATACATCAGCTCCAAGCCAGCAACTTTTTCAATCACATACATCTGCTCCAAGCTAG 1500 0.5573 MDPTSIPPPPPPLPTTITTAVPFTLEPNNHVPPAANVIPIPNSNPAAAAPPTANHNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYRDLPPTHSALLTHHLKRLKTTGLLVMVKKSYKLPPPRSDTHPHPHAVADADADADASLPPSTTAAPLQTPRGRGRPPKLKPQHQPQSFVPQNAEPVWVALGLADEPSTEIMKRGPGRPRKIGVGPAVPVRRGRPPGTGRSRLPKRPGRPPKPKSVSTISNGLKRRPGRPPKIQSIPTVIPFAAPAPDVPAETLPPTGPTASVSIWSPRPRGRPRKIAAAVPGVGVPPPPVIGGVARGRGRRRGSGVVLPVMRQGRPPKLAVVGRPKRPVGRPKGATAATSAQKVANEDLSRKLNYFQSKVKESLGMLKPYFNHESPVTAIAAMQELEILANLDLKASSRDETQQLQQPQPLPLQLPPQQQPLPQQLPQAQIYQQQYPQILPQPQLQQLFQPHTSAPSQQLFQSHTSAPS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00014 499 MobiDBLite consensus disorder prediction 123 182 - -
Gabi1963g00014 499 SUPERFAMILY "Winged helix" DNA-binding domain 54 130 IPR036390 -
Gabi1963g00014 499 SMART AT_hook_2 160 172 IPR017956 GO:0003677
Gabi1963g00014 499 SMART AT_hook_2 356 368 IPR017956 GO:0003677
Gabi1963g00014 499 SMART AT_hook_2 297 309 IPR017956 GO:0003677
Gabi1963g00014 499 SMART AT_hook_2 253 265 IPR017956 GO:0003677
Gabi1963g00014 499 SMART AT_hook_2 218 230 IPR017956 GO:0003677
Gabi1963g00014 499 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Gabi1963g00014 499 Gene3D - 52 133 IPR036388 -
Gabi1963g00014 499 Pfam linker histone H1 and H5 family 57 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi1963g00014 499 MobiDBLite consensus disorder prediction 429 458 - -
Gabi1963g00014 499 CDD H15 57 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi1963g00014 499 MobiDBLite consensus disorder prediction 198 264 - -
Gabi1963g00014 499 MobiDBLite consensus disorder prediction 473 499 - -
Gabi1963g00014 499 FunFam Histone H1.2 53 135 - -
Gabi1963g00014 499 PRINTS AT-hook-like domain signature 216 227 IPR017956 GO:0003677
Gabi1963g00014 499 PRINTS AT-hook-like domain signature 160 170 IPR017956 GO:0003677
Gabi1963g00014 499 PRINTS AT-hook-like domain signature 295 305 IPR017956 GO:0003677
Gabi1963g00014 499 MobiDBLite consensus disorder prediction 124 140 - -
Gabi1963g00014 499 PANTHER HISTONE H1 42 262 - -
Gabi1963g00014 499 MobiDBLite consensus disorder prediction 354 373 - -
Gabi1963g00014 499 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi1963g00014 499 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00014 Gabi-Chr1963 126414 129615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00014 61 124 Single Myb Histone (SMH) Gene Family AT1G49950 45.312 8.14e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1963g00014 - - aprc:113856313 423.705