Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00013 ATGGACCCAACTTCGATCCCTCCTCCTCCTCCTCCTCTGCCCACCACCATCACCACTGCCGTCCCCTTCACCCTCGAACCCAACAATCACGTACCCCCCGCCGCCAACGTCATCCCCATCCCTAACTCCAACCCAGCTGCTGCTGCTCCTCCTACTGCCAACCACAATCATCCCCCTTATGACGAGATGATATACACAGCAATTGGAGCGTTGAAGGAGAAGGACGGGTCGAGCAAGCGAGCAATAGGGAAGTACATAGAGCAAGTGTACAGAGACCTTCCACCGACTCACTCGGCCTTGTTGACTCACCACCTCAAGCGCTTGAAAACCACTGGTCTTCTCGTTATGGTCAAGAAATCTTACAAGCTCCCTCCCCCTAGCACCGCCGCTCCTCTTCAAACCCCAAGGGGCCGCGGTAGGCCCCCCAAGCTCAAGCCCCAGCACCAGCCCCAATCCTTTGTGCCGCAGAATGCTGAGCCCGTCTGGGTCGCGCTTGGGCTTGCGGATGAGCCTTCAACTGAAATCATGAAAAGAGGCCCGGGACGTCCTCGAAAGATTGGCGTGGGCCCCGCGGTTCCAGTCAGAAGAGGCCGCCCACCTGGGACGGGGAGATCTAGGTTGCCGAAGAGGCCCGGCCGTCCTCCTAAGCCCAAATCCGTGTCGACAATCTCGAATGGGCTCAAGCGACGCCCGGGCCGCCCACCCAAAATTCAATCGATACCAACCGTTATACCGTTCGCCGCCCCTGCTCCTGACGTGCCCGCGGAAACATTACCGCCAACTGGTCCGACTGCTTCTGTATCCATTTGGTCACCGAGGCCCAGAGGGCGTCCCAGGAAGATTGCCGCTGCAGTTCCTGGTGTGGGAGTTCCGCCACCCCCTGTGATTGGTGGTGTCGCCCGTGGTCGTGGTCGCCGAAGGGGAAGCGGGGTGGTCTTGCCCGTGATGAGGCAGGGTCGTCCTCCGAAGCTTGCCGTCGTTGGGAGGCCCAAGAGGCCCGTGGGCCGCCCAAAGGGAGCAACGGCTGCTACTTCAGCGCAAAAGGTTGCTAATGAAGATCTAAGTAGGAAACTTAATTACTTTCAATCAAAAGTGAAGGAATCTCTTGGTATGCTGAAGCCTTATTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATGCAAGAGTTGGAAATACTGGCAAATTTGGACCTTAAAGCATCATCAAGGGATGAAACACAACAACTGCAGCAACCACAACCGCTACCGCTACAGCTACCGCCACAGCAACAGCCGCTGCCTCAGCAACTGCCACAGGCACAGATTTATCAACAGCAATATCCCCAGATACTGCCTCAGCCACAGCTGCAGCAACTTTTTCAACCACATACATCAGCTCCAAGCCAGCAACTTTTTCAATCACATACATCTGCTCCAAGCTAG 1425 0.5614 MDPTSIPPPPPPLPTTITTAVPFTLEPNNHVPPAANVIPIPNSNPAAAAPPTANHNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYRDLPPTHSALLTHHLKRLKTTGLLVMVKKSYKLPPPSTAAPLQTPRGRGRPPKLKPQHQPQSFVPQNAEPVWVALGLADEPSTEIMKRGPGRPRKIGVGPAVPVRRGRPPGTGRSRLPKRPGRPPKPKSVSTISNGLKRRPGRPPKIQSIPTVIPFAAPAPDVPAETLPPTGPTASVSIWSPRPRGRPRKIAAAVPGVGVPPPPVIGGVARGRGRRRGSGVVLPVMRQGRPPKLAVVGRPKRPVGRPKGATAATSAQKVANEDLSRKLNYFQSKVKESLGMLKPYFNHESPVTAIAAMQELEILANLDLKASSRDETQQLQQPQPLPLQLPPQQQPLPQQLPQAQIYQQQYPQILPQPQLQQLFQPHTSAPSQQLFQSHTSAPS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00013 474 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi1963g00013 474 PRINTS Histone H5 signature 205 224 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi1963g00013 474 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi1963g00013 474 MobiDBLite consensus disorder prediction 404 433 - -
Gabi1963g00013 474 PRINTS AT-hook-like domain signature 191 202 IPR017956 GO:0003677
Gabi1963g00013 474 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Gabi1963g00013 474 PRINTS AT-hook-like domain signature 270 280 IPR017956 GO:0003677
Gabi1963g00013 474 PANTHER HISTONE H1 43 238 - -
Gabi1963g00013 474 SMART AT_hook_2 331 343 IPR017956 GO:0003677
Gabi1963g00013 474 SMART AT_hook_2 228 240 IPR017956 GO:0003677
Gabi1963g00013 474 SMART AT_hook_2 272 284 IPR017956 GO:0003677
Gabi1963g00013 474 SMART AT_hook_2 193 205 IPR017956 GO:0003677
Gabi1963g00013 474 SMART AT_hook_2 177 189 IPR017956 GO:0003677
Gabi1963g00013 474 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Gabi1963g00013 474 MobiDBLite consensus disorder prediction 448 474 - -
Gabi1963g00013 474 SUPERFAMILY "Winged helix" DNA-binding domain 51 128 IPR036390 -
Gabi1963g00013 474 Gene3D - 52 133 IPR036388 -
Gabi1963g00013 474 MobiDBLite consensus disorder prediction 122 157 - -
Gabi1963g00013 474 FunFam Histone H1.2 53 133 - -
Gabi1963g00013 474 CDD H15 57 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi1963g00013 474 MobiDBLite consensus disorder prediction 173 239 - -
Gabi1963g00013 474 MobiDBLite consensus disorder prediction 328 348 - -
Gabi1963g00013 474 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi1963g00013 474 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi1963g00013 474 Pfam linker histone H1 and H5 family 57 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00013 Gabi-Chr1963 126414 129615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00013 61 139 Single Myb Histone (SMH) Gene Family AT1G49950 41.772 9.91e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1963g00013 - - aprc:113856313 432.18