Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00012 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAATCAATCAGAAGGTGCACAAGGGTCTACTTCATCAAAGAGCAACAAGTCCAATGATGGTTCTTCTTCATCTCCTACCCATAAGAAGCTTTCGAGTTGGTTGCATTCAGTTTCTAATTGGCAGAGTCCAAGTCCTCCGTCTCCTAACCTGGCCACAGGAGAAAGAATGGAGCCATCTGATTCAACGAGCAGTGGTGGTTTAGATGTTGTTTCTGATTCAGCGAGGCGTGATTCAGGGTCTAGCACTTCGAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAATTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTTTATGATCTGTATGGGATCTTAACTGAATCAACCTCGGCAAGAATGCCTTCTCTTGTAGATTTGCAAGGAACACCAACGTCAGATGGCGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAATTTGTTGAAACTTGAGCAAAAAGCCCTGGAGCTGGCAGTCAAGTCAAGAAAAGATTCTGAGGTAGTCGGAGATATTAATTTGGTACGCAAGCTTGCAATACAAGTGGCTGACTATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTTAAGAGCATGGAGGAGTCTTAGTTATAGTCTGAAAGCAACACTTGGTAGCATGGTTTTGCCACTTGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTATTATTTAAGGTTTTAGCTGATAGTTTGGGCATCCCATGTCGGTTGGTTAAAGGACTACAATATACAGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTAATGGCAGCTCCTGGAATCCTTATTCCATCTGATGCAACTGGATCACATATCGAGTACGATGAATCTTCTTTTGTAGCCAGTCCTTCATCAAGGGATCTTGATTCATCTCATATAGCATCATTCAGTAGCGGGGTTGGAAGTTCTGAAGAAACTTCAGACTTTGGGACTGTGGATAAAGGAAATAGATCAAAACATTTTGCCTATGCAGGGAAAGAATCTGATGCAAGCAGGCCCGCTACAGGCAAGGAAGAATTAAAGAAACCACTAAATGAATTCAAAAATAGCCCCAATGCAGAGATCATAACGGAGGAATCTCCTAGCAGACCTAATTATCCATATATACATGGAAGATTTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTAAAAGATGTTTCCCAATATATGATTGATGCTGCAAAGGAGAACCCTAACTTGGCTCAAAAACTTCACAATGTTTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACTTATTTTCTGAAATTTATCATGAGCGGTTAGGTTCCCCAACTGAGGCCTATTTTCCAACTGAAGAAAAAGATGAATTTAAACAGGGAAATGTGCAGCTAGAAACTAAGGTTGATGATAATCAAGGTCCTGCTCTATTTTTGCCTCCTTTGCCTCACCACAGAGTTCATCCCAAAGCAAAACCTAGCAGTCAGCTAGAGCATTCTAAGCCTGTTGAAGGTTTAGGAATCAGCCTTCCTCTTGATTCAAGGGAAGCTGCTGGACAGCACATACCATCTCAGGTAGAAGCAACAACTCAGGTAAAGTATGGGAAGAATGTCCCGGTTGCTGCGGCTGCTGCTGCTGCTGCTGTTGTTGCATCTAAAATGGTAGTTGCTGTGGCAAAGTCAAGCACCGACACGAATCTCGAGATACCTGTAGCAGCAGCTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCAGGGTAGTCGAAGTGATGGAGATACAGAGAGTGCTGGTAATGAGACCAAGGGTAGTGGTGATGGAGAGCATAATGCTTTAGGAGCAAACTCAGAAGGCGAGAGAAAATCTGATAGATCAGTGAGTAATGATAGCACAAAGTCTGATTCTGCGCTAGATGATGTTGCCGAGTATGACATTCCTTGGGAGGAAATCACGATGGGTGAGCGTATCGGACTTGGATCATATGGGGAAGTGTACCGAGGTGATTGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTAGATCAAGATATCTCCGGTGAATCACTTGAAGAATTTAAAAGCGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTGCTTTTCATGGGAGCTGTAACGCGACCTCCAAATCTTTCAATTGTTACCGAATTTCTTCCGAGAGGGAGTTTGTATAGGTTAATTCACCGACCTAACAGTCAATTAGATGAACGAAGGCGGTTGAGGATGGCTTTGGATGCTGCTCGAGGAATGAACTATTTGCACAACTGCAATCCAGTGATAGTCCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGCGATTTTGGCTTATCACGCATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGTGACGTTTATAGCTATGGGGTCATATTATGGGAGCTATCTACTTTACAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTTGACATTCCAGATGATATCGACCCAGCCGTTGCAGATATTATCAGACAATGTTGGCAGACAGATCCAAAGTTGAGACCCACATTTGCTGAAATAATGGCCGCTCTAAAGCCTTTGCAGAAGCCAATTACTAGTTCTCTAGTGCATAGACCAAGTGCTCAGTCATCACGAGTTGCTGAAGACCCCGCAGGATAG 3036 0.4368 MKNILKKLHIMSNQSEGAQGSTSSKSNKSNDGSSSSPTHKKLSSWLHSVSNWQSPSPPSPNLATGERMEPSDSTSSGGLDVVSDSARRDSGSSTSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSARMPSLVDLQGTPTSDGVTWEAVLVNRAADSNLLKLEQKALELAVKSRKDSEVVGDINLVRKLAIQVADYMGGSVEDPESMLRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDDVAMNFVKIDDGREYIVDLMAAPGILIPSDATGSHIEYDESSFVASPSSRDLDSSHIASFSSGVGSSEETSDFGTVDKGNRSKHFAYAGKESDASRPATGKEELKKPLNEFKNSPNAEIITEESPSRPNYPYIHGRFPSWTEGISSPAVRRMKVKDVSQYMIDAAKENPNLAQKLHNVLLESGVVAPPNLFSEIYHERLGSPTEAYFPTEEKDEFKQGNVQLETKVDDNQGPALFLPPLPHHRVHPKAKPSSQLEHSKPVEGLGISLPLDSREAAGQHIPSQVEATTQVKYGKNVPVAAAAAAAAVVASKMVVAVAKSSTDTNLEIPVAAAATAAAVVATTAAVSKQYEQGSRSDGDTESAGNETKGSGDGEHNALGANSEGERKSDRSVSNDSTKSDSALDDVAEYDIPWEEITMGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNSQLDERRRLRMALDAARGMNYLHNCNPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVYSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDIDPAVADIIRQCWQTDPKLRPTFAEIMAALKPLQKPITSSLVHRPSAQSSRVAEDPAG 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00012 1011 ProSitePatterns Protein kinases ATP-binding region signature. 737 758 IPR017441 GO:0005524
Gabi1963g00012 1011 Pfam Ethylene-responsive protein kinase Le-CTR1 141 344 - -
Gabi1963g00012 1011 Gene3D Transferase(Phosphotransferase) domain 1 810 994 - -
Gabi1963g00012 1011 CDD STKc_MAP3K-like 737 983 - -
Gabi1963g00012 1011 MobiDBLite consensus disorder prediction 664 718 - -
Gabi1963g00012 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Gabi1963g00012 1011 FunFam Serine/threonine-protein kinase isoform 1 722 809 - -
Gabi1963g00012 1011 PRINTS Tyrosine kinase catalytic domain signature 910 932 IPR001245 GO:0004672|GO:0006468
Gabi1963g00012 1011 PRINTS Tyrosine kinase catalytic domain signature 954 976 IPR001245 GO:0004672|GO:0006468
Gabi1963g00012 1011 PRINTS Tyrosine kinase catalytic domain signature 844 862 IPR001245 GO:0004672|GO:0006468
Gabi1963g00012 1011 PRINTS Tyrosine kinase catalytic domain signature 891 901 IPR001245 GO:0004672|GO:0006468
Gabi1963g00012 1011 PRINTS Tyrosine kinase catalytic domain signature 805 818 IPR001245 GO:0004672|GO:0006468
Gabi1963g00012 1011 SUPERFAMILY Protein kinase-like (PK-like) 716 982 IPR011009 -
Gabi1963g00012 1011 Gene3D Phosphorylase Kinase; domain 1 724 808 - -
Gabi1963g00012 1011 FunFam Serine/threonine-protein kinase CTR1 810 993 - -
Gabi1963g00012 1011 MobiDBLite consensus disorder prediction 1 102 - -
Gabi1963g00012 1011 MobiDBLite consensus disorder prediction 555 575 - -
Gabi1963g00012 1011 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 992 - -
Gabi1963g00012 1011 MobiDBLite consensus disorder prediction 694 709 - -
Gabi1963g00012 1011 Pfam Protein tyrosine and serine/threonine kinase 731 983 IPR001245 GO:0004672|GO:0006468
Gabi1963g00012 1011 MobiDBLite consensus disorder prediction 664 684 - -
Gabi1963g00012 1011 MobiDBLite consensus disorder prediction 8 89 - -
Gabi1963g00012 1011 ProSiteProfiles Protein kinase domain profile. 731 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00012 1011 SMART serkin_6 731 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00012 Gabi-Chr1963 92087 103639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00012 1 968 MAP Kinase Kinase Kinase AT1G18160 60.892 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi1963g00012 PK_Tyr_Ser-Thr 9.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1963g00012 - - gmx:100778331 1676.76