Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00011 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAATCAATCAGAAGGTGCACAAGGGTCTACTTCATCAAAGAGCAACAAGTCCAATGATGGTTCTTCTTCATCTCCTACCCATAAGAAGCTTTCGAGTTGGTTGCATTCAGTTTCTAATTGGCAGAGTCCAAGTCCTCCGTCTCCTAACCTGGCCACAGGAGAAAGAATGGAGCCATCTGATTCAACGAGCAGTGGTGGTTTAGATGTTGTTTCTGATTCAGCGAGGCGTGATTCAGGGTCTAGCACTTCGAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAATTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTTTATGATCTGTATGGGATCTTAACTGAATCAACCTCGGCAAGAATGCCTTCTCTTGTAGATTTGCAAGGAACACCAACGTCAGATGGCGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAATTTGTTGAAACTTGAGCAAAAAGCCCTGGAGCTGGCAGTCAAGTCAAGAAAAGATTCTGAGGTAGTCGGAGATATTAATTTGGTACGCAAGCTTGCAATACAAGTGGCTGACTATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTTAAGAGCATGGAGGAGTCTTAGTTATAGTCTGAAAGCAACACTTGGTAGCATGGTTTTGCCACTTGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTATTATTTAAGGTTTTAGCTGATAGTTTGGGCATCCCATGTCGGTTGGTTAAAGGACTACAATATACAGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTAATGGCAGCTCCTGGAATCCTTATTCCATCTGATGCAACTGGATCACATATCGAGTACGATGAATCTTCTTTTGTAGCCAGTCCTTCATCAAGGGATCTTGATTCATCTCATATAGCATCATTCAGTAGCGGGGTTGGAAGTTCTGAAGAAACTTCAGACTTTGGGACTGTGGATAAAGGAAATAGATCAAAACATTTTGCCTATGCAGGGAAAGAATCTGATGCAAGCAGGCCCGCTACAGGCAAGGAAGAATTAAAGAAACCACTAAATGAATTCAAAAATAGCCCCAATGCAGAGATCATAACGGAGGAATCTCCTAGCAGACCTAATTATCCATATATACATGGAAGATTTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTAAAAGATGTTTCCCAATATATGATTGATGCTGCAAAGGAGAACCCTAACTTGGCTCAAAAACTTCACAATGTTTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACTTATTTTCTGAAATTTATCATGAGCGGTTAGGTTCCCCAACTGAGGCCTATTTTCCAACTGAAGAAAAAGATGAATTTAAACAGGGAAATGTGCAGCTAGAAACTAAGGTTGATGATAATCAAGGTCCTGCTCTATTTTTGCCTCCTTTGCCTCACCACAGAGTTCATCCCAAAGCAAAACCTAGCAGTCAGCTAGAGCATTCTAAGCCTGTTGAAGGTTTAGGAATCAGCCTTCCTCTTGATTCAAGGGAAGCTGCTGGACAGCACATACCATCTCAGGTAGAAGCAACAACTCAGGTAAAGTATGGGAAGAATGTCCCGGTTGCTGCGGCTGCTGCTGCTGCTGCTGTTGTTGCATCTAAAATGGTAGTTGCTGTGGCAAAGTCAAGCACCGACACGAATCTCGAGATACCTGTAGCAGCAGCTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCAGGGTAGTCGAAGTGATGGAGATACAGAGAGTGCTGGTAATGAGACCAAGGGTAGTGGTGATGGAGAGCATAATGCTTTAGGAGCAAACTCAGAAGGCGAGAGAAAATCTGATAGATCAGTGAGTAATGATAGCACAAAGTCTGATTCTGCGCTAGATGATGTTGCCGAGTATGACATTCCTTGGGAGGAAATCACGATGGGATCATATGGGGAAGTGTACCGAGGTGATTGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTAGATCAAGATATCTCCGGTGAATCACTTGAAGAATTTAAAAGCGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTGCTTTTCATGGGAGCTGTAACGCGACCTCCAAATCTTTCAATTGTTACCGAATTTCTTCCGAGAGGGAGTTTGTATAGGTTAATTCACCGACCTAACAGTCAATTAGATGAACGAAGGCGGTTGAGGATGGCTTTGGATGCTGCTCGAGGAATGAACTATTTGCACAACTGCAATCCAGTGATAGTCCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGCGATTTTGGCTTATCACGCATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGTGACGTTTATAGCTATGGGGTCATATTATGGGAGCTATCTACTTTACAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTTGACATTCCAGATGATATCGACCCAGCCGTTGCAGATATTATCAGACAATGTTGGCAGACAGATCCAAAGTTGAGACCCACATTTGCTGAAATAATGGCCGCTCTAAAGCCTTTGCAGAAGCCAATTACTAGTTCTCTAGTGCATAGACCAAGTGCTCAGTCATCACGAGTTGCTGAAGACCCCGCAGGATAG 3018 0.4361 MKNILKKLHIMSNQSEGAQGSTSSKSNKSNDGSSSSPTHKKLSSWLHSVSNWQSPSPPSPNLATGERMEPSDSTSSGGLDVVSDSARRDSGSSTSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSARMPSLVDLQGTPTSDGVTWEAVLVNRAADSNLLKLEQKALELAVKSRKDSEVVGDINLVRKLAIQVADYMGGSVEDPESMLRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDDVAMNFVKIDDGREYIVDLMAAPGILIPSDATGSHIEYDESSFVASPSSRDLDSSHIASFSSGVGSSEETSDFGTVDKGNRSKHFAYAGKESDASRPATGKEELKKPLNEFKNSPNAEIITEESPSRPNYPYIHGRFPSWTEGISSPAVRRMKVKDVSQYMIDAAKENPNLAQKLHNVLLESGVVAPPNLFSEIYHERLGSPTEAYFPTEEKDEFKQGNVQLETKVDDNQGPALFLPPLPHHRVHPKAKPSSQLEHSKPVEGLGISLPLDSREAAGQHIPSQVEATTQVKYGKNVPVAAAAAAAAVVASKMVVAVAKSSTDTNLEIPVAAAATAAAVVATTAAVSKQYEQGSRSDGDTESAGNETKGSGDGEHNALGANSEGERKSDRSVSNDSTKSDSALDDVAEYDIPWEEITMGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNSQLDERRRLRMALDAARGMNYLHNCNPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVYSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDIDPAVADIIRQCWQTDPKLRPTFAEIMAALKPLQKPITSSLVHRPSAQSSRVAEDPAG 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00011 1005 Gene3D Transferase(Phosphotransferase) domain 1 804 988 - -
Gabi1963g00011 1005 ProSiteProfiles Protein kinase domain profile. 725 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00011 1005 MobiDBLite consensus disorder prediction 556 575 - -
Gabi1963g00011 1005 MobiDBLite consensus disorder prediction 664 718 - -
Gabi1963g00011 1005 CDD STKc_MAP3K-like 734 977 - -
Gabi1963g00011 1005 Gene3D Phosphorylase Kinase; domain 1 723 802 - -
Gabi1963g00011 1005 FunFam Serine/threonine-protein kinase CTR1 804 987 - -
Gabi1963g00011 1005 Pfam Protein tyrosine and serine/threonine kinase 729 977 IPR001245 GO:0004672|GO:0006468
Gabi1963g00011 1005 SMART serkin_6 725 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1963g00011 1005 MobiDBLite consensus disorder prediction 1 102 - -
Gabi1963g00011 1005 FunFam Serine/threonine-protein kinase isoform 1 722 803 - -
Gabi1963g00011 1005 MobiDBLite consensus disorder prediction 694 709 - -
Gabi1963g00011 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Gabi1963g00011 1005 PRINTS Tyrosine kinase catalytic domain signature 904 926 IPR001245 GO:0004672|GO:0006468
Gabi1963g00011 1005 PRINTS Tyrosine kinase catalytic domain signature 838 856 IPR001245 GO:0004672|GO:0006468
Gabi1963g00011 1005 PRINTS Tyrosine kinase catalytic domain signature 885 895 IPR001245 GO:0004672|GO:0006468
Gabi1963g00011 1005 PRINTS Tyrosine kinase catalytic domain signature 948 970 IPR001245 GO:0004672|GO:0006468
Gabi1963g00011 1005 PRINTS Tyrosine kinase catalytic domain signature 799 812 IPR001245 GO:0004672|GO:0006468
Gabi1963g00011 1005 MobiDBLite consensus disorder prediction 664 684 - -
Gabi1963g00011 1005 SUPERFAMILY Protein kinase-like (PK-like) 727 976 IPR011009 -
Gabi1963g00011 1005 MobiDBLite consensus disorder prediction 8 89 - -
Gabi1963g00011 1005 Pfam Ethylene-responsive protein kinase Le-CTR1 141 344 - -
Gabi1963g00011 1005 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00011 Gabi-Chr1963 92087 103639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00011 1 962 MAP Kinase Kinase Kinase AT1G18160 60.385 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi1963g00011 PK_Tyr_Ser-Thr 3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1963g00011 - - gmx:100778331 1659.04