Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1963g00002 ATGTGGATGGTGGGTTACAATGAAGGCGGTGAGTTCAACATGGCTGATTATGCATTCAATGGAAGGAAACTCAGGCCTCTCATGCCTAGGCCAATGACTTCACCTATCAACACTTCAACTACAAACACTCCTTGCTTAAGCCTCATTCATGACAATGATTTCTTTTCACAATATCACAATCTGGCATCAGCGGCAGAGCAGAGCAAGAGAGAGTTCAATAATACTCCACCAGTTGTGGTGAGTTCAAGGTGGAACCCTACCCCAGAGCAGCTAAGAGCATTGGAAGAGTTGTATAGAAAAGGGACAAGAACACCATCTGCTGAGCAAATCCAGCAAATAACTGCACAACTTAGAAGATTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGGCAGAAGCGCCGCCGTCAAATGGAATCAGCTGCTGAGGGTCACCCCCGTGACTTTGATACTACTCTTGAAAAGAAAGACTTAGGCGCAGGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATACAACGGGCAGCAAAAGCAGTGGTAGCAGAGAGTAGAACAGATGGATGGTTCCAATTCGATGAAGGAGAATTACAACAGAGAAAGAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTATCTTGTCCTCCATCTCCTACAGTTACCCCTCACCTCATACAACACACCCCTCCTATTAACTCTACAACTAGTATGGCCAATTCAACCACAGTAGCAGCAAGATTGATGGACCCAAAGCTTGTCAAGACCCATGATCTCAGCTTCTTCATTTCACCTCACAGAGAAAACGGTGTTATCCACTTAAGCAGTATCAGCACTGAGGATAATAATTGTGTGGAATCTCAAACCCTTCAACTTTTCCCTGTAAGGAATGGGCATGGCAGCAGTGATAACATTAACCAACAGAAAGAGACAGAGATATCAGTTTCAGCAATGAATGCGCCCAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1077 0.4383 MWMVGYNEGGEFNMADYAFNGRKLRPLMPRPMTSPINTSTTNTPCLSLIHDNDFFSQYHNLASAAEQSKREFNNTPPVVVSSRWNPTPEQLRALEELYRKGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHPRDFDTTLEKKDLGAGRTVFEVEQTKNWAPTNCSTLAEESVSIQRAAKAVVAESRTDGWFQFDEGELQQRKNFMERNATWHMMQLSCPPSPTVTPHLIQHTPPINSTTSMANSTTVAARLMDPKLVKTHDLSFFISPHRENGVIHLSSISTEDNNCVESQTLQLFPVRNGHGSSDNINQQKETEISVSAMNAPSQFFEFLPLKN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1963g00002 358 MobiDBLite consensus disorder prediction 143 161 - -
Gabi1963g00002 358 SMART HOX_1 79 146 IPR001356 GO:0003677
Gabi1963g00002 358 CDD homeodomain 83 143 IPR001356 GO:0003677
Gabi1963g00002 358 MobiDBLite consensus disorder prediction 140 161 - -
Gabi1963g00002 358 FunFam WUSCHEL-related homeobox 4 81 148 - -
Gabi1963g00002 358 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 65 352 IPR044555 GO:0003700|GO:0099402
Gabi1963g00002 358 Gene3D - 79 142 - -
Gabi1963g00002 358 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Gabi1963g00002 358 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Gabi1963g00002 358 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1963g00002 Gabi-Chr1963 5978 8055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1963g00002 1 358 Wox Gene Family AT3G18010 41.730 3.74e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi1963g00002 Homeodomain 5.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1963g00002 - - gmx:100777274 619.002