Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1956g00011 ATGGATGATGCCCGCCAACATGAAAACGTTAGGCATGCCATGGACTACTACAGAGGAGCACATTCCCCGTGGAGTATGGCTCCCCAACATCAAGTAAAGGAACCAAATGCACTAGTTTTGAATAAGAAAATTAGGTCCATTATGGCTGAAAGGCGCATTCTAGAACTAGAAGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGAGGCCCTTCGTCAGAGGGATGAAGCACTTGCTCAGAGGGATACTGCCCTACTGGAACGTGACAATGCCCTTGCTGCCCTTCAAAATTGGGACAATGCTGTCAACTTCTCATTAGGCAGTGGAATTCAACGTGGATCAAAGCGGATGCACCAGTCCACTGACTATCTAGGAAATATGACAGAATCATACAGTACAAAAGATGTGCCAATAACTGATGCCTTCCCAGTGACTGTTGTTACTTCTGAAGCTGTCAAATCTCATCTGGCTAAGAAAACAAAAGAGAACATGACAATCACTTCTAAGGCGTCAAAGCCACCTAGCAAAGGAAAGAAAATGAGTGAGGATTTAAACAGGCAAGCTTCTTCTGAAGGGACGAAGATCAAATCAGAATGGGACAGACAGGACGTTGGCTTGAATTTACTTACCTTTGATGAAACTACAATGCCTGTCCCAGTTTGTACATGCACTGGAGTAGCACGTCAGTGCTACAAATGGGGGAATGGTGGATGGCAGTCATCTTGTTGTACCACCACCTTGTCAATGTATCCACTGCCCCAGCTTCCAAACAAGCGTCATGCCCGAATTGGAGGGCGAAAGATGAGTGGAAGTGTCTTTACAAGACTGCTTAGTAGGGTGGCAGCAGAAGGCCATGATTTATCTATACCATTGGATCTCAAGAATTACTGGGCCAGACATGGAACAAATCGCTACATTACTATCAAGTAG 939 0.4515 MDDARQHENVRHAMDYYRGAHSPWSMAPQHQVKEPNALVLNKKIRSIMAERRILELEAAISEKNEALAARDEALRQRDEALAQRDTALLERDNALAALQNWDNAVNFSLGSGIQRGSKRMHQSTDYLGNMTESYSTKDVPITDAFPVTVVTSEAVKSHLAKKTKENMTITSKASKPPSKGKKMSEDLNRQASSEGTKIKSEWDRQDVGLNLLTFDETTMPVPVCTCTGVARQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRVAAEGHDLSIPLDLKNYWARHGTNRYITIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1956g00011 312 Coils Coil 56 83 - -
Gabi1956g00011 312 Pfam GAGA binding protein-like family 1 312 IPR010409 -
Gabi1956g00011 312 PANTHER - 14 312 IPR010409 -
Gabi1956g00011 312 MobiDBLite consensus disorder prediction 160 200 - -
Gabi1956g00011 312 SMART GAGA_bind_2 1 312 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1956g00011 Gabi-Chr1956 255913 262032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1956g00011 1 312 BBR or BPC Transcription factor family AT2G21240 56.962 1.20e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gabi1956g00011 GAGA_bind 1.5e-95 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1956g00011 - - jre:108986984 502.286