Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1956g00009 ATGGAAGAATCAACAGATGCAGATCCCATTAGTGTTTCCCTTCACATCCTCACTTCCCTCCTCGACGACGAAATCACCAGGGTCCACAACTTCAAAGGCAAGTGGGCCCTCGCCCGAGTCAAACTCACTCACCTCCAAGCCCAACTCACCGATTTCTCCGCCGAGTTCCCCAACGCCTCAACCTCCAACCCTCTCTCACTCGACCTCCTCCATTCCATCTTTCACACACTCAACGACGCCGTTTCACTCTCCAAACAGTGTCACTCCACAGACTTACCCCATGGGAAGCTCCACACCCAGAGCCACCTCGACTCCCTCCTCGCCAACCTCGACCGCCACGTCACCGATTGCGACATCCTCTTCCGCAGCGGCCTTCTCCACCAAAACGCCGTCGTTTCCAACTCTTCAAAGCGAGAGGCCGTTAGATCCGAATCCAGGAACCTCATCACCCGTTTGCAAATCGGGTCGCCGGATTCCAGAACCTCCGCGATGGACTCGCTGTTGAGTTTGCTCAACGAGGACGATAAGAACGTCACGATAGCTGTAGCGCAGGGCGTGGTTCCTGTCCTCGTTCGCCTCCTTGATTCTTCATCGGAGATGAAGGAGAAAACCGTTGCCGCTATTTCAAGAGTTTCGACGGTGGAAAGCGGCAAGAACGTTCTAATCGCGGAGGGTTTGTTGCTTCTGAATCACTTGCTTCGTGTTCTGGACTCCGGGAGTGGGTTCTCTATAGAGAAGGCATGCGTTGCGCTTCAAGCCCTGAGTTTCACGAAGGACAACGCGAGGGCTATTGGTTCAAGAGGTGGAATCTCGTCGCTGTTGGAGATTTGCCAGGCTGGCACGCCCGGTTCCCAAGCGTACGCGGCGGCGGTTTTGAGGAATCTCGCCGCGTTCCCCGAAACAAGAGAGAATTTCGTGGACGAGAATGCCCTTGTTGTTCTGTTAGGGTTGGGTTCTTCCGGAACCGCTTTGGCTAAGGAAAACGCGATTGGCTGTTTGTGTAATTTGATTTCAGAGGAAGAAACTTTGAGGGTTTTGGTGGTTAAGGAAGGTGGTGTTCAGTGTTTGAAGAATTTCTGGGACTCGGCTCCACTGGTTCCCAGTCTTGAAGTTGCGGTTGAAATGTTGAGGCACTTGGCTTCAAGTGCACCCATTGCTGAGGTTCTTGTTAATGATGGGTTTGTTGTTAGATTAACGGGTGTGTTAAATTGTGATGTGCTTGCGGTGAGAATTGCAGCGGCTAGAGCTGTTTATGCATTGGGTTTGAGCAGTGGAAAAACGAGGAAACAGATTGGGGAATGTGGGTGCATTCCCCCTCTGATTAAGATGCTTGATGGGAAGGGTGTGGAAGAGAAAGAAGCTGCAGCGAAGGCCTTGTCGGTGGTCTTGTTGCACACCGGGAATAGAAGGGTTTTCCGTAAGGATGATAGAGGGATAGTGAGTGCAGTTCAATTGTTGAACCCTTCGTTTCACAATTTGGATAAGAAATACCCTGTTTCGTTGTTGACCTCGCTCGTTCATTCCAAGAGTTGTAGGAAGCAAATGGTGGCTGCTGGTGCTCGTGTACATACGCAGAAGCTCGTTGAGATGGATGTCGAGGGGTCCAAGAAACTCTTGGAGAATCTTGGTCCTGGTAAGATATGGGGAGTTTTTACCAGACCCTAG 1665 0.5141 MEESTDADPISVSLHILTSLLDDEITRVHNFKGKWALARVKLTHLQAQLTDFSAEFPNASTSNPLSLDLLHSIFHTLNDAVSLSKQCHSTDLPHGKLHTQSHLDSLLANLDRHVTDCDILFRSGLLHQNAVVSNSSKREAVRSESRNLITRLQIGSPDSRTSAMDSLLSLLNEDDKNVTIAVAQGVVPVLVRLLDSSSEMKEKTVAAISRVSTVESGKNVLIAEGLLLLNHLLRVLDSGSGFSIEKACVALQALSFTKDNARAIGSRGGISSLLEICQAGTPGSQAYAAAVLRNLAAFPETRENFVDENALVVLLGLGSSGTALAKENAIGCLCNLISEEETLRVLVVKEGGVQCLKNFWDSAPLVPSLEVAVEMLRHLASSAPIAEVLVNDGFVVRLTGVLNCDVLAVRIAAARAVYALGLSSGKTRKQIGECGCIPPLIKMLDGKGVEEKEAAAKALSVVLLHTGNRRVFRKDDRGIVSAVQLLNPSFHNLDKKYPVSLLTSLVHSKSCRKQMVAAGARVHTQKLVEMDVEGSKKLLENLGPGKIWGVFTRP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1956g00009 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 226 IPR000225 GO:0005515
Gabi1956g00009 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 552 - -
Gabi1956g00009 554 Gene3D - 363 542 IPR011989 -
Gabi1956g00009 554 Gene3D - 133 362 IPR011989 -
Gabi1956g00009 554 SMART arm_5 174 213 IPR000225 GO:0005515
Gabi1956g00009 554 SMART arm_5 382 422 IPR000225 GO:0005515
Gabi1956g00009 554 SMART arm_5 423 464 IPR000225 GO:0005515
Gabi1956g00009 554 SMART arm_5 298 338 IPR000225 GO:0005515
Gabi1956g00009 554 SMART arm_5 257 297 IPR000225 GO:0005515
Gabi1956g00009 554 SUPERFAMILY ARM repeat 147 492 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1956g00009 Gabi-Chr1956 245645 247778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1956g00009 226 460 U-box Gene Family AT2G23140 26.809 6.11e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1956g00009 - - gmx:100807228 773.081