Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1952g00013 ATGGGAAGAGCACCATGTTGTGACAAGGCAATTGTGAAGAGAGGGCCATGGTCACCTGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGAATGGGACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTCAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCTCAGATGAAGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGGAGGACTGACAATGACATAAAGAACTATTGGAACACAAAGTTAAAGAAAAAGCTCATGGGGTTTCTTCTTGTTTCTCATCAAAGAAAACCTCAATTTCCATCTTCCAATGAACAAAATCCACTACCTTCTCCTTCTTCTCACCCACTATCCTCATCAATGTACACTGACTACTGCAGCTACAACCCAGCAACAGCTTCATCTTTCACAGGTCTTGAACCTATTTCACTTCCTTCAAGTAACTATGCAAGCACAAGTTGCAACACAACAACCTCAATTTCTGTCCCCTTTTACCAAAACCAAGAGTCCATGGTTAGTGTTAGTCCCATGCAACAATATTACCCTATCAGAGACAACATGCTCATTTTTGGTAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCACTCAGGTTAGCCATAGCAGGGAGATCAAGCAAGAGGAAATGGGTTATCAGAGCTACATGTCTAGTGGATTTGAAGAATATAACAACAATTTTATGCTTAGTTATGGAAGCACTAATGATGGTGGTGAAAATAATATTAACCATTATGCAGAAAAGTCATCATGTGGATTCTTTGGCCAAAAGCAAACCCCTAATTTGGATTATGATCTTGAGAATATTAAGCAATTGATTAGTAGTAGTAGTAACAACAACAGTTTCAGTATTGATGAAAACAAGACAGAGGAGAAAGGCATGTACTATTGCTACTACTGA 1014 0.4004 MGRAPCCDKAIVKRGPWSPEEDSKLKDYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGFLLVSHQRKPQFPSSNEQNPLPSPSSHPLSSSMYTDYCSYNPATASSFTGLEPISLPSSNYASTSCNTTTSISVPFYQNQESMVSVSPMQQYYPIRDNMLIFGSEGSCSSSDGSCTQVSHSREIKQEEMGYQSYMSSGFEEYNNNFMLSYGSTNDGGENNINHYAEKSSCGFFGQKQTPNLDYDLENIKQLISSSSNNNSFSIDENKTEEKGMYYCYY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1952g00013 337 FunFam Transcription factor MYB36 70 139 - -
Gabi1952g00013 337 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Gabi1952g00013 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi1952g00013 337 SMART sant 67 115 IPR001005 -
Gabi1952g00013 337 SMART sant 13 64 IPR001005 -
Gabi1952g00013 337 CDD SANT 71 113 IPR001005 -
Gabi1952g00013 337 Gene3D - 8 68 - -
Gabi1952g00013 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi1952g00013 337 MobiDBLite consensus disorder prediction 129 148 - -
Gabi1952g00013 337 FunFam Transcription factor RAX3 7 68 - -
Gabi1952g00013 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi1952g00013 337 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi1952g00013 337 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi1952g00013 337 Gene3D - 70 139 - -
Gabi1952g00013 337 CDD SANT 16 62 IPR001005 -
Gabi1952g00013 337 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi1952g00013 337 PANTHER OS09G0431300 PROTEIN 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1952g00013 Gabi-Chr1952 186794 188390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1952g00013 1 119 MYB Transcription Factor Family AT5G57620 89.916 8.45e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1952g00013 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1952g00013 K09422 - gmx:100796382 431.795