Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1952g00009 ATGGAGAGATCAGGGTACGGTCGTGATGAAATCTACAGGTCTCTAAGACCTTCCCTCGTACTTCCCGAAGACCCCAACATCTCCCTCGTATCATTCCTCTTCGAAAGTGTATCCTCTTTTCCCAACAAACACGCCCTTATCGACGCCGATTCCTCCGAAACACTCTCTTTCGCGCAACTCAAATCCCAAGTCGCCAAGCTCGCCCGTTGTTTCCTCCACCTTGGCATAAACAAAAACGACGTCGTCCTCTTGCTCGCACCCAACACCATTCACTTCCCCATATGCTTCCTCGCCGCAACAGCCATCGGCGCCGTCGTCTCCACCGCCAACCCTGTTTACACCGTCTTCGAGCTCTCCAAACAAGTCAACGACTCCAACCCCAAGCTCGTCATCACTGTCCCTGAATTATGCGACAAAGTGAAGGGTCTCAACCTTAAAACGATGATTCTCGGTTCCGAGAGTTTCAACGCGTTGTTGGAGGTGTCAGGGTCGGAAACAGAGTTGCCGGAAAACGACGTGAAGCAGGGTGATACGGCAGCGCTTTTGTACTCGTCGGGGACCACGGGGTTGAGCAAGGGCGTGGTGCTCACGCACGGGAACTTCATCGCGGCGTCGCTCATGGTTGGCATGGACGACGATTTGGCCGGAGAATTCGACCACGTGTTCCTTTGCGTTTTGCCGATGTTTCATGTCTTTGCGCTCGCGATTATCTTGTACGCGCAGCTCCGGCGAGGGTGTACGGTGGTGTCGTTGAGGAGGTTCGAGTTGGAGGCATTTCTGAAGGCGATTGAGAAGCATAAGGTGACGAGCCTGTGGGTTGTGCCTCCCATAGTGCTTGCTCTGGCGAAACAGAGTGTGGTTAGTAACTATGATCTTTCATCGTTGAAGCGTATTAGTTCTGGTGCTGCTCCTCTTCGCAAAGAATTGATGGAAGAGTGTGCAAGACGTTTCCCTCATGCTATAGTTTATCAGGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAATAGGGATTCGTCATAGTGGCTCAGCAGGAATTCTGGCTTCAGGGGTCGAAGCTCAAATAGTGTGTGTGGATACACATAAGCCCCTCCCTCCTAGACAGTTAGGGGAGATATGGGTACGGGGTCCTAACATGATGCAAGGTTATTATAACAATCCACAGGCCACAAGATTGACTATAGATGAAAAGGGGTGGGTACACACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTATGTTGTTGATCGTATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTAGTTTCTCACCCTGAAATAGTAGAGGCTGTTGTCATCCCATATCCGGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGTTCACTTAACAGTTCGCTGACCGAAGAAGAAGTTCAGAAGTTTATTGCTAATCAGGTTGCACCTTTCAAAAGATTGCGAAGGGTGACATTCATCACAACTGTTCCTAAGACAGCTTCAGGACAACTTCTCAGAAGAGAGTTTATTACAAAAGCACGATCCAAAATATAA 1593 0.489 MERSGYGRDEIYRSLRPSLVLPEDPNISLVSFLFESVSSFPNKHALIDADSSETLSFAQLKSQVAKLARCFLHLGINKNDVVLLLAPNTIHFPICFLAATAIGAVVSTANPVYTVFELSKQVNDSNPKLVITVPELCDKVKGLNLKTMILGSESFNALLEVSGSETELPENDVKQGDTAALLYSSGTTGLSKGVVLTHGNFIAASLMVGMDDDLAGEFDHVFLCVLPMFHVFALAIILYAQLRRGCTVVSLRRFELEAFLKAIEKHKVTSLWVVPPIVLALAKQSVVSNYDLSSLKRISSGAAPLRKELMEECARRFPHAIVYQGYGMTETCGIVSVENPRIGIRHSGSAGILASGVEAQIVCVDTHKPLPPRQLGEIWVRGPNMMQGYYNNPQATRLTIDEKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEIVEAVVIPYPDDEAGEVPIAYVVRSLNSSLTEEEVQKFIANQVAPFKRLRRVTFITTVPKTASGQLLRREFITKARSKI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1952g00009 530 Gene3D - 9 427 IPR042099 -
Gabi1952g00009 530 CDD 4CL 21 521 - -
Gabi1952g00009 530 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
Gabi1952g00009 530 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 427 - -
Gabi1952g00009 530 Pfam AMP-binding enzyme C-terminal domain 441 515 IPR025110 -
Gabi1952g00009 530 Gene3D - 428 528 IPR045851 -
Gabi1952g00009 530 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 524 - -
Gabi1952g00009 530 FunFam 4-coumarate--CoA ligase 2 428 529 - -
Gabi1952g00009 530 Pfam AMP-binding enzyme 34 432 IPR000873 -
Gabi1952g00009 530 SUPERFAMILY Acetyl-CoA synthetase-like 21 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1952g00009 Gabi-Chr1952 124690 130262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1952g00009 1 530 Monolignol Biosynthesis Gene Families AT4G05160 67.647 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1952g00009 K01904 - gmx:100808944 838.18